Variant report

Variant	rs4077552
Chromosome Location	chr1:179352925-179352926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10494520	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10753191	0.90[JPT][hapmap]
rs10753192	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10798662	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10798665	0.87[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs10798670	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10913731	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913732	0.90[ASN][1000 genomes]
rs10913733	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10913734	0.90[JPT][hapmap]
rs10913737	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10913738	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10913742	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913758	0.89[ASN][1000 genomes]
rs10913806	0.88[CHB][hapmap]
rs12047160	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12073906	0.89[ASN][1000 genomes]
rs12073970	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12097041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12118625	0.89[ASN][1000 genomes]
rs12120123	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12130876	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131473	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131475	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12134114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12138436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12138619	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12144580	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12405133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12405321	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12408349	1.00[CHB][hapmap]
rs12408477	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs12725126	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12736300	0.82[ASN][1000 genomes]
rs12740270	0.82[ASN][1000 genomes]
rs12740455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12745772	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12759446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1329276	0.88[CHB][hapmap]
rs13306731	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13374852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16854009	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16854229	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2274623	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2274625	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2636266	0.81[CHB][hapmap]
rs2793805	0.81[CHB][hapmap]
rs3753526	0.87[CEU][hapmap];0.90[JPT][hapmap]
rs4077551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41315575	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4133136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4394601	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59334094	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61822772	0.85[ASN][1000 genomes]
rs61824395	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6425537	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6669967	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs931441	0.82[CHB][hapmap]
rs9660720	0.89[ASN][1000 genomes]
rs975025	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2762031	chr1:179323738-179375197	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	nsv518403	chr1:179323919-179371973	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv548279	chr1:179323919-179390148	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv3514400	chr1:179349344-179400533	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3514401	chr1:179349344-179400533	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3451112	chr1:179352344-179400533	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv523087	chr1:179352736-179371973	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179352600-179353800	Enhancers	HepG2	liver

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