Variant report

Variant	rs2274625
Chromosome Location	chr1:179520844-179520845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:179519934-179520847	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:179519967-179520871	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000261250	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10494515	0.94[GIH][hapmap];0.81[JPT][hapmap]
rs10494516	0.81[JPT][hapmap]
rs10494520	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10798670	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10913816	0.89[GIH][hapmap];0.81[JPT][hapmap]
rs12073970	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs12097041	0.81[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs12120123	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12130876	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs12131473	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs12131475	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs12132906	0.85[ASN][1000 genomes]
rs12134114	0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs12135209	0.91[ASN][1000 genomes]
rs12138436	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs12140299	0.80[ASN][1000 genomes]
rs12140376	0.87[ASN][1000 genomes]
rs12405133	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs12405321	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12406695	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408477	0.97[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs12725126	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs12740455	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs12745772	0.81[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs12759446	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs13374852	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs16854009	0.95[JPT][hapmap]
rs16854229	0.81[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16854429	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs1887816	0.81[JPT][hapmap]
rs2274623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508518	0.80[ASN][1000 genomes]
rs34816244	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35577489	0.80[EUR][1000 genomes]
rs35777003	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35954891	0.80[ASN][1000 genomes]
rs36068644	0.80[ASN][1000 genomes]
rs3767841	0.94[GIH][hapmap];0.81[JPT][hapmap]
rs3829795	0.81[JPT][hapmap]
rs4077551	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4077552	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4133136	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs61826054	0.80[ASN][1000 genomes]
rs61826055	0.80[ASN][1000 genomes]
rs61827681	0.81[ASN][1000 genomes]
rs6669967	0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap]
rs71514854	0.80[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179515600-179521800	Enhancers	Placenta	Placenta
2	chr1:179518600-179521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:179519600-179521000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:179519600-179521000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:179519600-179521400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:179519800-179521400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:179520000-179521000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:179520000-179521000	Enhancers	Hela-S3	cervix
9	chr1:179520000-179521000	Enhancers	NHEK	skin
10	chr1:179520000-179521400	Enhancers	GM12878-XiMat	blood
11	chr1:179520200-179521000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:179520200-179521800	Enhancers	A549	lung
13	chr1:179520400-179521000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:179520600-179521000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:179520600-179521000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:179520600-179521200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:179520600-179521400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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