Variant report

Variant	rs35577489
Chromosome Location	chr1:179561527-179561528
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12122719	0.82[ASN][1000 genomes]
rs12125696	0.97[ASN][1000 genomes]
rs12134090	0.98[ASN][1000 genomes]
rs12402619	0.83[ASN][1000 genomes]
rs12406695	0.82[EUR][1000 genomes]
rs16854513	0.82[ASN][1000 genomes]
rs2274623	0.80[EUR][1000 genomes]
rs2274625	0.80[EUR][1000 genomes]
rs35777003	0.92[EUR][1000 genomes]
rs4329461	0.83[ASN][1000 genomes]
rs61826407	0.90[ASN][1000 genomes]
rs6663420	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424735	chr1:179559954-179562502	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179560600-179561600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
2	chr1:179560600-179562000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:179560800-179561600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr1:179561000-179561600	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr1:179561400-179561600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:179561400-179561600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:179561400-179561600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr1:179561400-179561600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:179561400-179561600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
10	chr1:179561400-179561600	Enhancers	Esophagus	oesophagus
11	chr1:179561400-179561600	Bivalent Enhancer	Fetal Intestine Large	intestine
12	chr1:179561400-179561600	Bivalent Enhancer	Placenta	Placenta
13	chr1:179561400-179561600	Weak transcription	Right Atrium	heart
14	chr1:179561400-179561600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
15	chr1:179561400-179561600	Flanking Bivalent TSS/Enh	A549	lung
16	chr1:179561400-179562000	Bivalent/Poised TSS	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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