Variant report

Variant	rs3829795
Chromosome Location	chr1:179545669-179545670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:179545668-179545718	NHDF-neo	bronchial:	n/a
2	chr1:179545668-179545718	GM12892	blood:	n/a
3	chr1:179545668-179545718	AG10803	skin:	n/a
4	chr1:179545668-179545718	NH-A	brain:	n/a
5	chr1:179545668-179545718	HepG2	liver:	n/a
6	chr1:179545668-179545718	AG09309	skin:	n/a
7	chr1:179545668-179545718	U87	brain:	n/a
8	chr1:179545668-179545718	HCPEpiC	choroid plexus:	n/a
9	chr1:179545668-179545718	CMK	blood:	n/a
10	chr1:179545668-179545718	ECC-1	luminal epithelium:	n/a
11	chr1:179545668-179545718	HCT-116	colon:	n/a
12	chr1:179545668-179545718	HMEC	breast:	n/a
13	chr1:179545668-179545718	HUVEC	blood vessel:	n/a
14	chr1:179545668-179545718	ovcar-3	ovarian:	n/a
15	chr1:179545668-179545718	HIPEpiC	eye:	n/a
16	chr1:179545668-179545718	HAEpiC	amniotic membrane:	n/a
17	chr1:179545668-179545718	AG04449	skin:	fetal
18	chr1:179545668-179545718	NT2-D1	testis:	n/a
19	chr1:179545668-179545718	HRPEpiC	eye:	n/a
20	chr1:179545668-179545718	AG09319	gingival:	n/a
21	chr1:179545668-179545718	T-47D	breast:	n/a
22	chr1:179545668-179545718	HRE	kidney:	n/a
23	chr1:179545668-179545718	Hepatocyte	liver:	n/a
24	chr1:179545668-179545718	HCM	heart:	n/a
25	chr1:179545668-179545718	RPTEC	kidney:	n/a
26	chr1:179545668-179545718	HNPCEpiC	eye:	n/a
27	chr1:179545668-179545718	HCF	heart:	n/a
28	chr1:179545668-179545718	H1-hESC	embryonic stem cell:	embryo
29	chr1:179545668-179545718	HEK293	kidney:	embryo
30	chr1:179545668-179545718	GM12891	blood:	n/a
31	chr1:179545668-179545718	SK-N-SH	brain:	n/a
32	chr1:179545668-179545718	BE2_C	brain:	n/a
33	chr1:179545668-179545718	MCF10A-Er-Src	breast:	n/a
34	chr1:179545668-179545718	PANC-1	pancreas:	n/a
35	chr1:179545668-179545718	K562	blood:	n/a
36	chr1:179545668-179545718	NB4	blood:	n/a
37	chr1:179545668-179545718	IMR90	lung:	fetal
38	chr1:179545668-179545718	PFSK-1	brain:	n/a
39	chr1:179545668-179545718	GM12878	blood:	n/a
40	chr1:179545668-179545718	GM06990	blood:	n/a
41	chr1:179545668-179545718	SKMC	muscle:	n/a
42	chr1:179545668-179545718	GM19239	blood:	n/a
43	chr1:179545668-179545718	Jurkat	blood:	n/a
44	chr1:179545668-179545718	MCF-7	breast:	n/a
45	chr1:179545668-179545718	HL-60	blood:	n/a
46	chr1:179545668-179545718	NHBE	bronchial:	n/a
47	chr1:179545668-179545718	LNCaP	prostate:	n/a
48	chr1:179545668-179545718	SK-N-SH_RA	brain:	n/a
49	chr1:179545668-179545718	ProgFib	skin:	n/a
50	chr1:179545668-179545718	HRCEpiC	kidney:	n/a

No data

Variant related genes	Relation type
NPHS2	CpG island

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10458351	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10494515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10494516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10913815	0.91[CHB][hapmap]
rs10913816	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11577538	0.82[CHB][hapmap]
rs11586725	0.83[CHB][hapmap]
rs12023357	0.81[YRI][hapmap]
rs1410587	0.91[CHB][hapmap]
rs1410588	0.91[CHB][hapmap]
rs1410591	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1410592	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16854229	0.81[JPT][hapmap]
rs1887814	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1887816	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2274623	0.81[JPT][hapmap]
rs2274625	0.81[JPT][hapmap]
rs2274626	0.82[CHB][hapmap]
rs3767840	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3767841	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6662262	0.91[CHB][hapmap]
rs6666456	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7541890	0.83[CHB][hapmap]
rs7546708	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs913514	0.80[CHB][hapmap]
rs928017	0.91[CHB][hapmap]
rs9286930	0.87[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3829795	RP11-545A16.3	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179543200-179546400	Bivalent/Poised TSS	Fetal Kidney	kidney
2	chr1:179544800-179545800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr1:179545200-179546000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr1:179545400-179545800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
5	chr1:179545400-179545800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
6	chr1:179545400-179545800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
7	chr1:179545400-179546000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:179545600-179545800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr1:179545600-179545800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr1:179545600-179545800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr1:179545600-179545800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:179545600-179545800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:179545600-179546000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr1:179545600-179546000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr1:179545600-179546000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:179545600-179546000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:179545600-179546000	Bivalent Enhancer	Small Intestine	intestine

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