Variant report

Variant	rs9286930
Chromosome Location	chr1:179522221-179522222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179521857..179523808-chr1:179524455..179526910,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10458351	0.81[ASN][1000 genomes]
rs10494515	0.86[CHB][hapmap]
rs10494516	0.87[CHB][hapmap]
rs10494517	0.86[ASN][1000 genomes]
rs10494518	0.86[ASN][1000 genomes]
rs10913815	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs10913816	0.86[CHB][hapmap]
rs11577538	0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs11586725	0.95[CHB][hapmap];0.96[ASN][1000 genomes]
rs11808258	0.90[ASN][1000 genomes]
rs12566954	0.86[ASN][1000 genomes]
rs1410585	0.82[ASN][1000 genomes]
rs1410587	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs1410588	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs1410592	0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs16854244	0.86[ASN][1000 genomes]
rs2149399	0.84[ASN][1000 genomes]
rs2209922	0.86[ASN][1000 genomes]
rs2274626	0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296960	0.93[ASN][1000 genomes]
rs3754132	0.85[ASN][1000 genomes]
rs3767841	0.86[CHB][hapmap]
rs3829795	0.87[CHB][hapmap]
rs4111171	0.80[ASN][1000 genomes]
rs41267596	0.86[ASN][1000 genomes]
rs4651042	0.86[ASN][1000 genomes]
rs4652406	0.86[ASN][1000 genomes]
rs4652407	0.86[ASN][1000 genomes]
rs4652408	0.85[ASN][1000 genomes]
rs4652412	0.90[ASN][1000 genomes]
rs55908143	0.86[ASN][1000 genomes]
rs56071531	0.85[ASN][1000 genomes]
rs57340322	0.83[ASN][1000 genomes]
rs6425572	0.86[ASN][1000 genomes]
rs6425574	0.86[ASN][1000 genomes]
rs6658180	0.85[ASN][1000 genomes]
rs6662262	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs6666456	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs72704477	0.87[ASN][1000 genomes]
rs7519700	0.96[ASN][1000 genomes]
rs7529107	0.85[ASN][1000 genomes]
rs7541890	0.95[CHB][hapmap];0.96[ASN][1000 genomes]
rs7541899	0.96[ASN][1000 genomes]
rs7546708	0.80[ASN][1000 genomes]
rs7548654	0.85[ASN][1000 genomes]
rs7551610	0.90[ASN][1000 genomes]
rs913514	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs928017	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs964983	0.86[ASN][1000 genomes]
rs964984	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9286930	TDRD5	cis	Adipose Subcutaneous	GTEx
rs9286930	TDRD5	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179522000-179523600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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