Variant report

Variant	rs7546708
Chromosome Location	chr1:179523090-179523091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10458351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10494515	0.90[ASN][1000 genomes]
rs10494516	0.90[ASN][1000 genomes]
rs10913816	0.91[ASN][1000 genomes]
rs1410591	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1410592	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1887814	0.85[EUR][1000 genomes]
rs1887816	0.88[EUR][1000 genomes]
rs2274626	0.80[ASN][1000 genomes]
rs3767840	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767841	0.91[ASN][1000 genomes]
rs3829795	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6666456	0.95[ASN][1000 genomes]
rs9286930	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7546708	RP11-545A16.3	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179522000-179523600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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