Variant report

Variant	rs1410591
Chromosome Location	chr1:179520254-179520255
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:179519934-179520847	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr1:179519776-179520264	MCF10A-Er-Src	breast:	n/a	n/a
3	NR3C1	chr1:179519920-179520333	A549	lung:	n/a	n/a
4	FOS	chr1:179519967-179520871	MCF10A-Er-Src	breast:	n/a	n/a
5	BHLHE40	chr1:179520197-179520259	HepG2	liver:	n/a	n/a
6	CHD1	chr1:179520242-179520275	GM12878	blood:	n/a	n/a
7	FOS	chr1:179519924-179520833	MCF10A-Er-Src	breast:	n/a	n/a
8	CEBPB	chr1:179519968-179520271	HepG2	liver:	n/a	n/a
9	FOS	chr1:179519936-179520830	MCF10A-Er-Src	breast:	n/a	n/a
10	MYC	chr1:179519986-179520294	MCF10A-Er-Src	breast:	n/a	n/a
11	NR3C1	chr1:179520006-179520270	A549	lung:	n/a	n/a
12	STAT3	chr1:179519828-179520802	MCF10A-Er-Src	breast:	n/a	n/a
13	JUND	chr1:179519994-179520267	K562	blood:	n/a	chr1:179520098-179520109
14	STAT3	chr1:179519855-179520261	MCF10A-Er-Src	breast:	n/a	n/a
15	E2F4	chr1:179520105-179520286	MCF10A-Er-Src	breast:	n/a	n/a
16	JUND	chr1:179519964-179520291	HepG2	liver:	n/a	chr1:179520098-179520109
17	CEBPB	chr1:179520060-179520722	A549	lung:	n/a	n/a

Variant related genes	Relation type
ENSG00000261250	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10458351	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10494515	0.87[ASN][1000 genomes]
rs10494516	0.87[ASN][1000 genomes]
rs10913816	0.87[ASN][1000 genomes]
rs11577538	0.81[ASN][1000 genomes]
rs11586725	0.81[ASN][1000 genomes]
rs1410592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887814	0.86[EUR][1000 genomes]
rs1887816	0.89[EUR][1000 genomes]
rs3767840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767841	0.87[ASN][1000 genomes]
rs3829795	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6666456	1.00[ASN][1000 genomes]
rs7519700	0.81[ASN][1000 genomes]
rs7541890	0.81[ASN][1000 genomes]
rs7541899	0.81[ASN][1000 genomes]
rs7546708	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1410591	RP11-545A16.3	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179515600-179521800	Enhancers	Placenta	Placenta
3	chr1:179518600-179520400	Weak transcription	Gastric	stomach
4	chr1:179518600-179521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:179519600-179521000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:179519600-179521000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:179519600-179521400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:179519800-179520400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:179519800-179520600	Enhancers	NHDF-Ad	bronchial
10	chr1:179519800-179521400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:179520000-179520800	Enhancers	HSMMtube	muscle
12	chr1:179520000-179521000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:179520000-179521000	Enhancers	Hela-S3	cervix
14	chr1:179520000-179521000	Enhancers	NHEK	skin
15	chr1:179520000-179521400	Enhancers	GM12878-XiMat	blood
16	chr1:179520200-179520600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:179520200-179520600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:179520200-179520600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:179520200-179520600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:179520200-179520600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr1:179520200-179520600	Enhancers	Right Atrium	heart
22	chr1:179520200-179520600	Enhancers	NH-A	brain
23	chr1:179520200-179521000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr1:179520200-179521800	Enhancers	A549	lung

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