Variant report

Variant	rs6666456
Chromosome Location	chr1:179518799-179518800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10458351	0.96[ASN][1000 genomes]
rs10494515	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10494516	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10913765	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10913815	0.81[CHB][hapmap]
rs10913816	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11577538	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs11585517	0.88[YRI][hapmap]
rs11586725	0.91[CHB][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs12743373	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12749731	0.86[JPT][hapmap]
rs12757065	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1410587	0.81[CHB][hapmap]
rs1410588	0.81[CHB][hapmap]
rs1410591	1.00[ASN][1000 genomes]
rs1410592	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1887816	0.81[JPT][hapmap]
rs2274622	0.87[YRI][hapmap]
rs2274626	0.91[CHB][hapmap]
rs2296960	0.88[YRI][hapmap]
rs3765547	0.85[YRI][hapmap]
rs3767840	1.00[ASN][1000 genomes]
rs3767841	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs3829795	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4400577	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4424468	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4651025	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4652374	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6662262	0.81[CHB][hapmap]
rs6664339	0.87[JPT][hapmap]
rs6678667	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6690348	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs6693627	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7519700	0.81[ASN][1000 genomes]
rs7541890	0.91[CHB][hapmap];0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs7541899	0.81[ASN][1000 genomes]
rs7546708	0.95[ASN][1000 genomes]
rs913514	0.84[CHB][hapmap]
rs928017	0.81[CHB][hapmap]
rs9286930	0.95[CHB][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179515600-179521800	Enhancers	Placenta	Placenta
3	chr1:179516800-179519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:179516800-179520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:179518200-179519000	Weak transcription	Pancreas	Pancrea
6	chr1:179518400-179519000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr1:179518600-179519000	Enhancers	Stomach Mucosa	stomach
8	chr1:179518600-179520400	Weak transcription	Gastric	stomach
9	chr1:179518600-179521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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