Variant report

Variant	rs1410592
Chromosome Location	chr1:179520506-179520507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:179519934-179520847	MCF10A-Er-Src	breast:	n/a	n/a
2	RCOR1	chr1:179520505-179520705	K562	blood:	n/a	n/a
3	EBF1	chr1:179520397-179520788	GM12878	blood:	n/a	n/a
4	FOS	chr1:179519967-179520871	MCF10A-Er-Src	breast:	n/a	n/a
5	PAX5	chr1:179520395-179520678	GM12878	blood:	n/a	n/a
6	FOS	chr1:179519924-179520833	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr1:179519936-179520830	MCF10A-Er-Src	breast:	n/a	n/a
8	CREB1	chr1:179520379-179520756	GM12878	blood:	n/a	n/a
9	PAX5	chr1:179520349-179520652	GM12878	blood:	n/a	n/a
10	MAFK	chr1:179520495-179520840	K562	blood:	n/a	n/a
11	STAT3	chr1:179519828-179520802	MCF10A-Er-Src	breast:	n/a	n/a
12	CEBPB	chr1:179520492-179520796	Hela-S3	cervix:	n/a	n/a
13	PAX5	chr1:179520328-179520758	GM12878	blood:	n/a	n/a
14	EBF1	chr1:179520370-179520835	GM12878	blood:	n/a	n/a
15	EBF1	chr1:179520422-179520731	GM12878	blood:	n/a	n/a
16	JUN	chr1:179520433-179520824	K562	blood:	n/a	n/a
17	BATF	chr1:179520477-179520820	GM12878	blood:	n/a	chr1:179520650-179520661
18	JUND	chr1:179520498-179520786	K562	blood:	n/a	n/a
19	CHD2	chr1:179520418-179520694	GM12878	blood:	n/a	n/a
20	BATF	chr1:179520426-179520797	GM12878	blood:	n/a	chr1:179520650-179520661
21	EP300	chr1:179520503-179520780	GM12878	blood:	n/a	n/a
22	POLR2A	chr1:179520421-179520842	H1-neurons	neurons:	n/a	n/a
23	STAT3	chr1:179520505-179520792	MCF10A-Er-Src	breast:	n/a	n/a
24	RUNX3	chr1:179520450-179520734	GM12878	blood:	n/a	n/a
25	CEBPB	chr1:179520060-179520722	A549	lung:	n/a	n/a
26	MYC	chr1:179520483-179520783	NB4	blood:	n/a	n/a
27	STAT3	chr1:179520501-179520819	MCF10A-Er-Src	breast:	n/a	n/a
28	MAX	chr1:179520424-179520829	NB4	blood:	n/a	n/a
29	MAFF	chr1:179520488-179520806	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000261250	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10458351	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10494515	0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs10494516	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10913765	0.86[JPT][hapmap]
rs10913816	0.86[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs11577538	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs11586725	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs12743373	0.86[JPT][hapmap]
rs12749731	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs12757065	0.86[JPT][hapmap]
rs1410591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1887814	0.96[CEU][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs1887816	0.96[CEU][hapmap];0.82[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs2274626	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]
rs3767840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767841	0.86[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs3829795	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4400577	0.86[JPT][hapmap]
rs4424468	0.86[JPT][hapmap]
rs4651025	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs4652374	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs6664339	0.80[ASW][hapmap];0.86[JPT][hapmap]
rs6666456	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6678667	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs6690348	0.86[JPT][hapmap]
rs6693627	0.86[JPT][hapmap]
rs7519700	0.81[ASN][1000 genomes]
rs7541890	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs7541899	0.81[ASN][1000 genomes]
rs7546708	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs913514	0.84[CHB][hapmap]
rs9286930	0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1410592	RP11-545A16.3	cis	Adipose Subcutaneous	GTEx
rs1410592	FAM163A	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179515600-179521800	Enhancers	Placenta	Placenta
3	chr1:179518600-179521200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:179519600-179521000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:179519600-179521000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:179519600-179521400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:179519800-179520600	Enhancers	NHDF-Ad	bronchial
8	chr1:179519800-179521400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:179520000-179520800	Enhancers	HSMMtube	muscle
10	chr1:179520000-179521000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:179520000-179521000	Enhancers	Hela-S3	cervix
12	chr1:179520000-179521000	Enhancers	NHEK	skin
13	chr1:179520000-179521400	Enhancers	GM12878-XiMat	blood
14	chr1:179520200-179520600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:179520200-179520600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:179520200-179520600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:179520200-179520600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:179520200-179520600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:179520200-179520600	Enhancers	Right Atrium	heart
20	chr1:179520200-179520600	Enhancers	NH-A	brain
21	chr1:179520200-179521000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:179520200-179521800	Enhancers	A549	lung
23	chr1:179520400-179520600	Enhancers	Gastric	stomach
24	chr1:179520400-179521000	Enhancers	HUES6 Cell Line	embryonic stem cell

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