Variant report

Variant	rs10494515
Chromosome Location	chr1:179517140-179517141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10458351	0.91[ASN][1000 genomes]
rs10494516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913815	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs10913816	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.99[ASN][1000 genomes]
rs11577538	0.82[CHB][hapmap]
rs11586725	0.82[CHB][hapmap]
rs1410587	0.90[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs1410588	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs1410591	0.87[ASN][1000 genomes]
rs1410592	0.85[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs16854229	0.81[JPT][hapmap]
rs16854429	0.82[GIH][hapmap];0.84[MEX][hapmap]
rs1887814	0.81[JPT][hapmap]
rs1887816	1.00[JPT][hapmap];0.84[MEX][hapmap]
rs2274623	0.94[GIH][hapmap];0.81[JPT][hapmap]
rs2274625	0.94[GIH][hapmap];0.81[JPT][hapmap]
rs2274626	0.82[CHB][hapmap]
rs3767840	0.87[ASN][1000 genomes]
rs3767841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3829795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6662262	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6666456	0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs7541890	0.82[CHB][hapmap]
rs7546708	0.90[ASN][1000 genomes]
rs928017	0.90[CHB][hapmap];0.84[CHD][hapmap];0.81[ASN][1000 genomes]
rs9286930	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522746	chr1:179501365-179518459	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv523253	chr1:179516072-179518459	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179510600-179520600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:179514000-179518200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:179515400-179517800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:179515600-179521800	Enhancers	Placenta	Placenta
5	chr1:179516000-179517800	Weak transcription	Pancreas	Pancrea
6	chr1:179516800-179519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:179516800-179520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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