Variant report

Variant	rs16854429
Chromosome Location	chr1:179609589-179609590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494515	0.82[GIH][hapmap];0.84[MEX][hapmap]
rs12122719	0.94[ASN][1000 genomes]
rs12125696	0.89[ASN][1000 genomes]
rs12134090	0.80[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12402619	0.95[ASN][1000 genomes]
rs12406695	0.80[EUR][1000 genomes]
rs12728097	0.81[ASN][1000 genomes]
rs1328594	0.84[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap]
rs16854513	0.94[ASN][1000 genomes]
rs2274623	1.00[CEU][hapmap];0.88[GIH][hapmap];0.83[TSI][hapmap]
rs2274625	1.00[CEU][hapmap];0.88[GIH][hapmap]
rs35577489	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35777003	0.87[EUR][1000 genomes]
rs3767841	0.82[GIH][hapmap];0.85[MEX][hapmap]
rs4329461	0.95[ASN][1000 genomes]
rs4610966	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs61826407	0.96[ASN][1000 genomes]
rs6663420	0.82[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3394963	chr1:179605329-179609927	Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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