Variant report

Variant	rs2274626
Chromosome Location	chr1:179521932-179521933
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:179521825-179521982	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179521857..179523808-chr1:179524455..179526910,2	K562	blood:

Variant related genes	Relation type
ENSG00000261250	TF binding region

Extended variants
information (count: 63 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10458351	0.81[ASN][1000 genomes]
rs10494515	0.82[CHB][hapmap]
rs10494516	0.82[CHB][hapmap]
rs10494517	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10494518	0.88[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs10913815	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs10913816	0.82[CHB][hapmap]
rs11577538	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.96[ASN][1000 genomes]
rs11581470	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs11585517	0.82[JPT][hapmap]
rs11586725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11808258	0.88[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12566954	0.86[ASN][1000 genomes]
rs1410585	0.82[ASN][1000 genomes]
rs1410587	0.91[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs1410588	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs1410592	0.86[CHB][hapmap];0.83[CHD][hapmap];0.81[LWK][hapmap];0.82[YRI][hapmap]
rs16854042	0.90[JPT][hapmap]
rs16854244	0.86[ASN][1000 genomes]
rs2149399	0.81[CHD][hapmap];0.84[ASN][1000 genomes]
rs2209922	0.88[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2274622	0.91[GIH][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap]
rs2296960	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3754132	0.85[ASN][1000 genomes]
rs3765547	0.82[JPT][hapmap]
rs3767841	0.82[CHB][hapmap]
rs3829795	0.82[CHB][hapmap]
rs4072452	0.81[JPT][hapmap]
rs4111171	0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs41267596	0.86[ASN][1000 genomes]
rs4651042	0.86[ASN][1000 genomes]
rs4652369	0.81[JPT][hapmap]
rs4652380	0.81[JPT][hapmap]
rs4652406	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4652407	0.86[ASN][1000 genomes]
rs4652408	0.85[ASN][1000 genomes]
rs4652412	0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs55908143	0.86[ASN][1000 genomes]
rs56071531	0.85[ASN][1000 genomes]
rs57340322	0.83[ASN][1000 genomes]
rs6425557	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs6425572	0.86[ASN][1000 genomes]
rs6425574	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6658180	0.85[ASN][1000 genomes]
rs6662262	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs6666456	0.91[CHB][hapmap]
rs6679542	0.91[JPT][hapmap]
rs6700149	0.81[JPT][hapmap]
rs72704477	0.87[ASN][1000 genomes]
rs7413415	0.81[JPT][hapmap]
rs7519700	0.96[ASN][1000 genomes]
rs7529107	0.85[ASN][1000 genomes]
rs7541890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7541899	0.96[ASN][1000 genomes]
rs7546708	0.80[ASN][1000 genomes]
rs7548654	0.85[ASN][1000 genomes]
rs7551440	0.81[CHD][hapmap]
rs7551610	0.90[ASN][1000 genomes]
rs913514	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs928017	0.91[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs9286930	0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964983	0.88[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs964984	0.88[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs2274626	TDRD5	cis	parietal	SCAN
rs2274626	TDRD5	cis	Esophagus Mucosa	GTEx
rs2274626	RASAL2	cis	parietal	SCAN
rs2274626	TDRD5	cis	cerebellum	SCAN
rs2274626	CLIC4	trans	parietal	SCAN
rs2274626	TDRD5	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179521800-179522000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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