Variant report

Variant	rs7551440
Chromosome Location	chr1:179492085-179492086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10494517	0.91[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10494518	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10913815	0.88[CHD][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs11577538	0.81[CHD][hapmap]
rs11581440	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11581470	0.81[CHD][hapmap]
rs11808258	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs12566954	0.85[ASN][1000 genomes]
rs1329276	0.88[GIH][hapmap]
rs1410585	0.84[ASN][1000 genomes]
rs1410587	0.91[CHD][hapmap];0.91[JPT][hapmap];0.80[TSI][hapmap];0.87[ASN][1000 genomes]
rs1410588	0.89[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs16854244	0.85[ASN][1000 genomes]
rs1854337	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149399	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2209922	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs2274626	0.81[CHD][hapmap]
rs2296960	0.89[CHB][hapmap]
rs4111171	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs41267596	0.85[ASN][1000 genomes]
rs4651042	0.85[ASN][1000 genomes]
rs4652405	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4652406	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs4652407	0.85[ASN][1000 genomes]
rs4652408	0.84[ASN][1000 genomes]
rs4652412	0.91[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs55908143	0.85[ASN][1000 genomes]
rs56071531	0.84[ASN][1000 genomes]
rs57340322	0.84[ASN][1000 genomes]
rs6425557	0.81[CHD][hapmap]
rs6425572	0.85[ASN][1000 genomes]
rs6425574	0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs6658180	0.84[ASN][1000 genomes]
rs6662262	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6665833	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7548654	0.86[ASN][1000 genomes]
rs7551610	0.81[ASN][1000 genomes]
rs928017	0.86[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs964983	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs964984	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7551440	SOAT1	cis	cerebellum	SCAN
rs7551440	TDRD5	cis	Nerve Tibial	GTEx
rs7551440	TDRD5	cis	Artery Tibial	GTEx
rs7551440	TDRD5	cis	Thyroid	GTEx
rs7551440	TDRD5	cis	Adipose Subcutaneous	GTEx
rs7551440	TDRD5	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179486400-179499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:179486600-179499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:179487200-179515000	Weak transcription	Rectal Mucosa Donor 31	rectum

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