Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr1:179499386-179499935	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179497716..179500017-chr1:179555604..179558025,2	MCF-7	breast:

Variant related genes	Relation type
AXDND1	TF binding region
ENSG00000227141	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10494517	0.85[ASN][1000 genomes]
rs10494518	0.85[ASN][1000 genomes]
rs10913815	0.87[ASN][1000 genomes]
rs11581440	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11808258	0.81[ASN][1000 genomes]
rs12566954	0.85[ASN][1000 genomes]
rs1410585	0.81[ASN][1000 genomes]
rs1410587	0.87[ASN][1000 genomes]
rs1410588	0.87[ASN][1000 genomes]
rs16854244	0.85[ASN][1000 genomes]
rs1854337	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2149399	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2209922	0.85[ASN][1000 genomes]
rs41267596	0.85[ASN][1000 genomes]
rs4651042	0.85[ASN][1000 genomes]
rs4652406	0.85[ASN][1000 genomes]
rs4652407	0.85[ASN][1000 genomes]
rs4652408	0.84[ASN][1000 genomes]
rs4652412	0.81[ASN][1000 genomes]
rs55908143	0.85[ASN][1000 genomes]
rs56071531	0.84[ASN][1000 genomes]
rs57340322	0.81[ASN][1000 genomes]
rs6425572	0.85[ASN][1000 genomes]
rs6425574	0.85[ASN][1000 genomes]
rs6658180	0.84[ASN][1000 genomes]
rs6662262	0.87[ASN][1000 genomes]
rs6665833	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7548654	0.84[ASN][1000 genomes]
rs7551440	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7551610	0.81[ASN][1000 genomes]
rs928017	0.87[ASN][1000 genomes]
rs964983	0.85[ASN][1000 genomes]
rs964984	0.85[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4652405	TDRD5	cis	Adipose Subcutaneous	GTEx
rs4652405	TDRD5	cis	Nerve Tibial	GTEx
rs4652405	TDRD5	cis	Thyroid	GTEx
rs4652405	TDRD5	cis	Artery Tibial	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179486400-179499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:179486600-179499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:179487200-179515000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:179497000-179499600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:179498400-179499600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:179498600-179499600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:179498600-179500000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:179498600-179509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:179499000-179500200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:179499200-179499600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:179499200-179499600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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