Variant report

Variant	rs1887814
Chromosome Location	chr1:179551652-179551653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10458351	0.86[EUR][1000 genomes]
rs10494515	0.81[JPT][hapmap]
rs10494516	0.82[JPT][hapmap]
rs10913816	0.82[JPT][hapmap]
rs12216994	0.80[YRI][hapmap]
rs12216996	0.80[YRI][hapmap]
rs1328594	0.90[GIH][hapmap]
rs1410586	0.80[YRI][hapmap]
rs1410591	0.86[EUR][1000 genomes]
rs1410592	0.96[CEU][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs1887816	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs3767840	0.86[EUR][1000 genomes]
rs3767841	0.82[JPT][hapmap];0.95[YRI][hapmap]
rs3829795	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4610966	0.87[GIH][hapmap]
rs6663420	0.88[GIH][hapmap]
rs7546708	0.85[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1887814	TDRD5	cis	cerebellum	SCAN
rs1887814	TDRD5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179551200-179552800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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