Variant report

Variant	rs12023357
Chromosome Location	chr1:179474732-179474733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10798686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12047808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12216994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12216996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13306729	1.00[JPT][hapmap]
rs1410586	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16854035	1.00[JPT][hapmap]
rs16854064	1.00[JPT][hapmap]
rs16854186	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1928005	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs3829795	0.81[YRI][hapmap]
rs55998153	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56392198	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs59377201	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60323829	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73036755	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73051834	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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