Variant report
| Variant | rs16854186 |
|---|---|
| Chromosome Location | chr1:179473704-179473705 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10218630 | 0.90[YRI][hapmap] |
| rs10798686 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs10913751 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12023357 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs12047808 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs12216994 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs12216996 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs13306729 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1410586 | 0.91[CEU][hapmap] |
| rs16854035 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16854064 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2274624 | 0.84[CEU][hapmap];0.86[CHB][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3818587 | 0.84[CEU][hapmap];0.86[CHB][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs55998153 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56392198 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59377201 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60408652 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73036715 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73036735 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73036755 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv1820823 | chr1:179455645-179479803 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1832000 | chr1:179467663-179474053 | Inactive region | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
