Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10798686	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10913801	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs12023357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12216994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12216996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13306729	1.00[JPT][hapmap]
rs1410586	0.91[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1590786	0.85[CHB][hapmap]
rs16854035	1.00[JPT][hapmap]
rs16854064	1.00[JPT][hapmap]
rs16854186	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1928005	0.81[ASN][1000 genomes]
rs2274624	0.84[CEU][hapmap]
rs3818587	0.84[CEU][hapmap]
rs3898486	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs4651038	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs55998153	0.87[EUR][1000 genomes]
rs56392198	0.87[EUR][1000 genomes]
rs59377201	0.90[EUR][1000 genomes]
rs60323829	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6425558	0.83[CHD][hapmap]
rs6702905	0.85[CHB][hapmap]
rs73036755	0.87[EUR][1000 genomes]
rs73051834	0.81[ASN][1000 genomes]
rs7541905	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv15822	chr1:179467639-179469756	Inactive region	Chromatin interactive region	n/a	n/a	n/a
5	esv1828084	chr1:179467663-179469493	Inactive region	Chromatin interactive region	n/a	n/a	n/a
6	esv1832000	chr1:179467663-179474053	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv548333	chr1:179468145-179469314	Inactive region	Chromatin interactive region	n/a	n/a	n/a
8	nsv548334	chr1:179468145-179469493	Inactive region	Chromatin interactive region	n/a	n/a	n/a

Variant related diseases (count:1)

Disease	PMID	Source
Multiple sclerosis (age of onset)	19010793	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12047808	RABGAP1L	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: