Variant report

Variant	rs10913801
Chromosome Location	chr1:179471750-179471751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179465791..179468521-chr1:179470887..179473606,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10798671	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10798686	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs10913764	0.89[ASN][1000 genomes]
rs10913776	0.86[GIH][hapmap]
rs10913793	0.86[CHB][hapmap]
rs10913797	0.86[CHB][hapmap]
rs10913805	0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs10913807	0.90[GIH][hapmap]
rs11809606	0.86[CHB][hapmap]
rs12047808	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs12133017	0.80[CHB][hapmap]
rs12136977	0.86[CHB][hapmap]
rs12137397	0.86[CHB][hapmap]
rs12138189	0.86[CHB][hapmap]
rs12216994	0.85[CHB][hapmap]
rs12216996	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs12724074	0.86[CHB][hapmap]
rs1329277	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1576225	0.86[CHB][hapmap]
rs1590784	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1590786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1831180	0.83[GIH][hapmap]
rs1928004	0.83[GIH][hapmap]
rs2225213	0.86[CHB][hapmap]
rs3898486	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs4268319	0.87[ASN][1000 genomes]
rs4297245	0.85[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4442334	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4504843	0.87[ASN][1000 genomes]
rs4625243	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4651038	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652382	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6425558	0.85[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6425567	0.86[CHB][hapmap]
rs6668035	0.86[CHB][hapmap]
rs6672804	0.86[CHB][hapmap]
rs6674274	0.86[CHB][hapmap]
rs6683623	0.85[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6696896	0.83[GIH][hapmap]
rs6702905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7512551	0.83[GIH][hapmap]
rs7514278	0.86[GIH][hapmap]
rs7535800	0.86[CHB][hapmap]
rs7541905	0.85[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7544340	0.86[CHB][hapmap]
rs7546457	0.86[CHB][hapmap]
rs962429	0.86[CHB][hapmap]
rs964982	0.83[GIH][hapmap]
rs9787089	0.86[CHB][hapmap]
rs9787118	0.86[CHB][hapmap]
rs9787120	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1832000	chr1:179467663-179474053	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10913801	TDRD5	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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