Variant report

Variant	rs10913807
Chromosome Location	chr1:179479803-179479804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179477575..179481033-chr1:179483963..179487085,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1060775	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs10753193	1.00[JPT][hapmap]
rs10798682	1.00[JPT][hapmap]
rs10798689	1.00[CHB][hapmap]
rs10913776	0.89[GIH][hapmap];1.00[JPT][hapmap]
rs10913801	0.90[GIH][hapmap]
rs10913804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs11802193	1.00[ASN][1000 genomes]
rs11807786	1.00[ASN][1000 genomes]
rs12122753	1.00[JPT][hapmap]
rs12131398	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12136100	1.00[JPT][hapmap]
rs1328596	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1410590	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs1831180	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs1928001	1.00[ASN][1000 genomes]
rs1928004	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap]
rs2026014	1.00[JPT][hapmap]
rs2255375	1.00[CHB][hapmap]
rs3898486	0.82[GIH][hapmap]
rs4255343	1.00[JPT][hapmap]
rs4360482	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs4421551	1.00[JPT][hapmap]
rs4606280	0.81[GIH][hapmap];1.00[JPT][hapmap]
rs4620484	1.00[ASN][1000 genomes]
rs4625242	1.00[JPT][hapmap]
rs4651038	0.90[GIH][hapmap]
rs4651039	1.00[ASN][1000 genomes]
rs4651040	0.95[ASN][1000 genomes]
rs4652404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs4652417	1.00[CHD][hapmap]
rs6659294	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs6659378	1.00[ASN][1000 genomes]
rs6662859	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs6690605	1.00[ASN][1000 genomes]
rs6696896	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs6697280	1.00[JPT][hapmap]
rs6697373	1.00[JPT][hapmap]
rs6698201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs7416021	0.91[ASN][1000 genomes]
rs749960	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7512551	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7514278	0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7517766	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7518557	1.00[CHB][hapmap]
rs7522064	1.00[JPT][hapmap]
rs7542099	1.00[JPT][hapmap]
rs928016	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs963062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964982	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10913807	LHX4	cis	parietal	SCAN
rs10913807	FAM20B	cis	parietal	SCAN
rs10913807	TDRD5	cis	parietal	SCAN
rs10913807	TDRD5	cis	Artery Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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