Variant report
| Variant | rs10798689 |
|---|---|
| Chromosome Location | chr1:179513977-179513978 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NPHS2-1 | chr1:179512336-179515388 | ENSG00000261250.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1060775 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10913804 | 1.00[CHB][hapmap] |
| rs10913807 | 1.00[CHB][hapmap] |
| rs12119649 | 1.00[CEU][hapmap] |
| rs12125146 | 0.82[CEU][hapmap] |
| rs12131398 | 1.00[CHB][hapmap] |
| rs12131400 | 1.00[CHB][hapmap] |
| rs12134954 | 1.00[CEU][hapmap] |
| rs1328596 | 1.00[CHB][hapmap] |
| rs1410590 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1831180 | 1.00[CHB][hapmap] |
| rs1887815 | 0.86[YRI][hapmap] |
| rs1928004 | 1.00[CHB][hapmap] |
| rs2026014 | 0.80[YRI][hapmap] |
| rs3930537 | 0.84[YRI][hapmap] |
| rs4652404 | 1.00[CHB][hapmap] |
| rs6425575 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6690605 | 0.80[AFR][1000 genomes] |
| rs6696896 | 1.00[CHB][hapmap] |
| rs6698201 | 1.00[CHB][hapmap] |
| rs749960 | 0.84[YRI][hapmap] |
| rs7512551 | 1.00[CHB][hapmap] |
| rs7517766 | 1.00[CHB][hapmap];0.89[YRI][hapmap] |
| rs7518557 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs928016 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs963062 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs964982 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv522746 | chr1:179501365-179518459 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179487200-179515000 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 2 | chr1:179510600-179520600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
