Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr1:179521115-179521435	GM12892	blood:	n/a	chr1:179521267-179521286
2	PAX5	chr1:179521117-179521359	GM12892	blood:	n/a	chr1:179521267-179521286
3	PAX5	chr1:179521181-179521394	GM12878	blood:	n/a	chr1:179521267-179521286
4	PAX5	chr1:179521121-179521410	GM12878	blood:	n/a	chr1:179521267-179521286

Variant related genes	Relation type
ENSG00000261250	TF binding region

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1060775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798689	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10913804	1.00[CHB][hapmap]
rs10913807	1.00[CHB][hapmap]
rs12119649	1.00[CEU][hapmap]
rs12125146	0.82[CEU][hapmap]
rs12131398	1.00[CHB][hapmap]
rs12131400	1.00[CHB][hapmap]
rs12134954	1.00[CEU][hapmap]
rs1328596	1.00[CHB][hapmap]
rs1410590	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831180	1.00[CHB][hapmap]
rs1887815	0.84[YRI][hapmap]
rs1928004	1.00[CHB][hapmap]
rs2026014	0.90[YRI][hapmap]
rs3930537	0.94[YRI][hapmap]
rs4652404	1.00[CHB][hapmap]
rs4652417	0.88[YRI][hapmap]
rs6425575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690605	0.87[AFR][1000 genomes]
rs6696896	1.00[CHB][hapmap]
rs6698201	1.00[CHB][hapmap]
rs749960	0.94[YRI][hapmap]
rs7512551	1.00[CHB][hapmap]
rs7517766	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs928016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs963062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964982	1.00[CHB][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179515600-179521800	Enhancers	Placenta	Placenta
2	chr1:179519600-179521400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:179519800-179521400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:179520000-179521400	Enhancers	GM12878-XiMat	blood
5	chr1:179520200-179521800	Enhancers	A549	lung
6	chr1:179520600-179521400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:179521000-179521400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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