Variant report

Variant	rs749960
Chromosome Location	chr1:179544155-179544156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179543048..179545135-chr1:179554204..179557043,2	K562	blood:

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1060775	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1079292	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10798682	1.00[JPT][hapmap]
rs10798689	0.84[YRI][hapmap]
rs10913776	1.00[JPT][hapmap]
rs10913804	1.00[JPT][hapmap]
rs10913807	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12131398	1.00[JPT][hapmap]
rs12131400	1.00[JPT][hapmap]
rs12136100	1.00[JPT][hapmap]
rs1328595	0.83[GIH][hapmap];1.00[TSI][hapmap]
rs1328596	1.00[JPT][hapmap]
rs1410590	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1831180	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1887815	0.83[YRI][hapmap]
rs1928004	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1999069	0.83[EUR][1000 genomes]
rs2026014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3930537	0.87[LWK][hapmap];0.89[YRI][hapmap]
rs4255343	1.00[JPT][hapmap]
rs4360482	1.00[JPT][hapmap]
rs4606280	1.00[JPT][hapmap]
rs4625242	1.00[JPT][hapmap]
rs4651044	0.83[GIH][hapmap];1.00[TSI][hapmap]
rs4652404	1.00[JPT][hapmap]
rs4652417	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4652421	0.83[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4652423	0.83[EUR][1000 genomes]
rs6659294	1.00[JPT][hapmap]
rs6662859	1.00[JPT][hapmap]
rs6696896	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6698201	1.00[JPT][hapmap]
rs7512551	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7514278	1.00[JPT][hapmap]
rs7514875	0.83[EUR][1000 genomes]
rs7517766	0.89[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs7518557	0.94[YRI][hapmap]
rs7522064	1.00[JPT][hapmap]
rs928016	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs963062	1.00[JPT][hapmap]
rs964982	1.00[CHD][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179543200-179546400	Bivalent/Poised TSS	Fetal Kidney	kidney

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