Variant report

Variant	rs1079292
Chromosome Location	chr1:179544898-179544899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr1:179544490-179545086	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr1:179544583-179544935	H1-hESC	embryonic stem cell:	n/a	n/a
3	TBP	chr1:179544816-179545061	H1-hESC	embryonic stem cell:	n/a	n/a
4	GABPA	chr1:179544820-179545143	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr1:179544639-179545092	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr1:179544751-179545277	H1-hESC	embryonic stem cell:	n/a	n/a
7	ZNF143	chr1:179544738-179545005	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179543048..179545135-chr1:179554204..179557043,2	K562	blood:

Variant related genes	Relation type
RNU5F-2P	TF binding region
ENSG00000227141	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1999069	0.83[EUR][1000 genomes]
rs2026014	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652417	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4652421	0.83[EUR][1000 genomes]
rs4652423	0.83[EUR][1000 genomes]
rs749960	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7514875	0.83[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179543200-179546400	Bivalent/Poised TSS	Fetal Kidney	kidney
2	chr1:179544400-179545400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr1:179544400-179545400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:179544400-179545600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr1:179544400-179545600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr1:179544400-179545600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:179544400-179545600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr1:179544600-179545000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:179544600-179545200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:179544600-179545200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:179544600-179545200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:179544600-179545200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
13	chr1:179544600-179545200	Enhancers	Pancreas	Pancrea
14	chr1:179544600-179545400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr1:179544600-179545400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:179544600-179545400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr1:179544600-179545400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:179544600-179545600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr1:179544800-179545000	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
20	chr1:179544800-179545000	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
21	chr1:179544800-179545000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
22	chr1:179544800-179545200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:179544800-179545200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:179544800-179545200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:179544800-179545200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:179544800-179545200	Bivalent Enhancer	Fetal Brain Male	brain
27	chr1:179544800-179545200	Bivalent/Poised TSS	Fetal Brain Female	brain
28	chr1:179544800-179545200	Active TSS	Right Ventricle	heart
29	chr1:179544800-179545200	Enhancers	Spleen	Spleen
30	chr1:179544800-179545400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr1:179544800-179545400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:179544800-179545400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:179544800-179545400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:179544800-179545400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
35	chr1:179544800-179545400	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
36	chr1:179544800-179545400	Enhancers	Gastric	stomach
37	chr1:179544800-179545400	Bivalent Enhancer	Psoas Muscle	Psoas
38	chr1:179544800-179545400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
39	chr1:179544800-179545600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:179544800-179545800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell

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