Variant report

Variant	rs10913776
Chromosome Location	chr1:179426842-179426843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NPHS2-4	chr1:179426715-179426908	NONHSAT007862

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1060775	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs10753193	0.81[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs10798678	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10798682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913763	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10913794	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913801	0.86[GIH][hapmap]
rs10913804	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10913807	0.89[GIH][hapmap];1.00[JPT][hapmap]
rs12122753	0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs12131398	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12131400	1.00[JPT][hapmap]
rs12136100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1328596	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1410590	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs1831180	0.92[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.82[TSI][hapmap];0.88[YRI][hapmap]
rs1928004	0.92[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap]
rs2026014	1.00[JPT][hapmap]
rs3898486	0.93[GIH][hapmap]
rs4255343	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4360482	0.81[CEU][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4421551	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4584358	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4606280	0.81[CEU][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs4625242	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4651038	0.86[GIH][hapmap]
rs4652386	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4652404	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6425558	0.81[GIH][hapmap]
rs6659294	0.81[CEU][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs6662859	0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6666358	0.80[YRI][hapmap]
rs6683623	0.81[GIH][hapmap]
rs6696896	0.92[ASW][hapmap];0.91[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs6697280	1.00[JPT][hapmap]
rs6697285	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6697373	1.00[JPT][hapmap]
rs6698201	0.91[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs749960	1.00[JPT][hapmap]
rs7512551	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.82[TSI][hapmap]
rs7514278	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7517766	1.00[JPT][hapmap]
rs7522064	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7542099	1.00[JPT][hapmap]
rs928016	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs963062	1.00[JPT][hapmap]
rs964982	0.91[ASW][hapmap];0.91[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[YRI][hapmap]
rs9787088	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9787115	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv1009624	chr1:179423063-179459676	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
6	nsv1011557	chr1:179426390-179459460	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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