Variant report
| Variant | rs9787088 |
|---|---|
| Chromosome Location | chr1:179453239-179453240 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:179452715..179454955-chr1:179456900..179459797,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000269064 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10798678 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10798682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10913763 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10913776 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10913794 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10913804 | 0.89[AFR][1000 genomes] |
| rs11802193 | 0.82[AFR][1000 genomes] |
| rs1831180 | 0.82[AFR][1000 genomes] |
| rs4360482 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4584358 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4620484 | 0.82[AFR][1000 genomes] |
| rs4651039 | 0.82[AFR][1000 genomes] |
| rs4651040 | 0.81[AFR][1000 genomes] |
| rs4652386 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4652404 | 0.82[AFR][1000 genomes] |
| rs6659378 | 0.82[AFR][1000 genomes] |
| rs6662859 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6696896 | 0.82[AFR][1000 genomes] |
| rs6697285 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6698201 | 0.82[AFR][1000 genomes] |
| rs7522064 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs964982 | 0.82[AFR][1000 genomes] |
| rs9787115 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1009624 | chr1:179423063-179459676 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| 4 | nsv1011557 | chr1:179426390-179459460 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| 5 | nsv548299 | chr1:179452695-179456776 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 6 | nsv548300 | chr1:179452695-179457436 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
