Variant report

Variant	rs10913804
Chromosome Location	chr1:179476791-179476792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1060775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10753193	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10798682	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10798689	1.00[CHB][hapmap]
rs10913776	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10913794	0.87[AFR][1000 genomes]
rs10913807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11802193	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807786	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122753	1.00[JPT][hapmap]
rs12131398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12136100	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1328596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1410590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1831180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928001	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2026014	1.00[JPT][hapmap]
rs2255375	1.00[CHB][hapmap]
rs4255343	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4360482	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4421551	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4606280	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4620484	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4625242	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4651039	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651040	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4652404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659294	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs6659378	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662859	1.00[JPT][hapmap]
rs6690605	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696896	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697280	1.00[JPT][hapmap]
rs6697373	1.00[JPT][hapmap]
rs6698201	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7416021	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs749960	1.00[JPT][hapmap]
rs7512551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514278	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7517766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7518557	1.00[CHB][hapmap]
rs7522064	1.00[JPT][hapmap]
rs7542099	1.00[JPT][hapmap]
rs928016	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs963062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964982	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787088	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179476400-179476800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:179476600-179477800	Enhancers	Stomach Mucosa	stomach

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