Variant report

Variant	rs7517766
Chromosome Location	chr1:179547750-179547751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179546057..179548837-chr1:179552198..179554818,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1060775	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1079292	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10798682	1.00[JPT][hapmap]
rs10798689	1.00[CHB][hapmap];0.89[YRI][hapmap]
rs10913776	1.00[JPT][hapmap]
rs10913804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913807	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12131398	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12136100	1.00[JPT][hapmap]
rs1328595	0.83[GIH][hapmap];1.00[TSI][hapmap]
rs1328596	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1410590	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs1831180	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1887815	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs1928004	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1999069	0.83[EUR][1000 genomes]
rs2026014	1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3930537	0.90[LWK][hapmap];0.94[YRI][hapmap]
rs4255343	1.00[JPT][hapmap]
rs4360482	1.00[JPT][hapmap]
rs4606280	1.00[JPT][hapmap]
rs4651044	0.83[GIH][hapmap];1.00[TSI][hapmap]
rs4652404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4652417	0.87[ASW][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4652421	0.83[GIH][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4652423	0.83[EUR][1000 genomes]
rs6659294	1.00[JPT][hapmap]
rs6662859	1.00[JPT][hapmap]
rs6696896	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6698201	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs749960	0.89[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512551	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7514278	1.00[JPT][hapmap]
rs7514875	0.83[EUR][1000 genomes]
rs7518557	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7522064	1.00[JPT][hapmap]
rs928016	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs963062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs964982	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7517766	SAMSN1	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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