Variant report

Variant	rs7512551
Chromosome Location	chr1:179486598-179486599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179477575..179481033-chr1:179483963..179487085,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1060775	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap]
rs10753193	0.81[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs10798682	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10798689	1.00[CHB][hapmap]
rs10913776	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.82[TSI][hapmap]
rs10913801	0.83[GIH][hapmap]
rs10913804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913807	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs11802193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807786	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12122753	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs12131398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12131400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12136100	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12737288	0.81[EUR][1000 genomes]
rs1328596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1410590	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap]
rs1831180	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928001	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928004	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap]
rs2026014	1.00[JPT][hapmap]
rs2255375	1.00[CHB][hapmap]
rs3898486	0.89[GIH][hapmap]
rs4255343	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4297245	0.82[GIH][hapmap]
rs4360482	0.81[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs4421551	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4606280	0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs4620484	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4625242	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4651038	0.83[GIH][hapmap]
rs4651039	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651040	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4652404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652417	1.00[CHD][hapmap]
rs6425558	0.84[GIH][hapmap]
rs6659294	0.81[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap]
rs6659378	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662859	0.92[GIH][hapmap];1.00[JPT][hapmap]
rs6683623	0.84[GIH][hapmap]
rs6690605	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696896	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6697280	1.00[JPT][hapmap]
rs6697373	1.00[JPT][hapmap]
rs6698201	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7416021	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs749960	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7514278	1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.85[MKK][hapmap];0.82[TSI][hapmap]
rs7517766	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7518557	1.00[CHB][hapmap]
rs7522064	1.00[JPT][hapmap]
rs7542099	1.00[JPT][hapmap]
rs928016	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap]
rs963062	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs964982	0.81[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7512551	FAM163A	cis	parietal	SCAN
rs7512551	RASAL2	cis	parietal	SCAN
rs7512551	TDRD5	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179485400-179486800	Enhancers	Stomach Mucosa	stomach
2	chr1:179485800-179486800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:179486200-179486600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:179486400-179486600	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr1:179486400-179487000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr1:179486400-179487200	Active TSS	Colonic Mucosa	Colon
7	chr1:179486400-179487200	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr1:179486400-179499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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