Variant report

Variant	rs6702905
Chromosome Location	chr1:179469632-179469633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10798671	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10798686	0.85[CHB][hapmap]
rs10913764	0.92[ASN][1000 genomes]
rs10913793	0.86[CHB][hapmap]
rs10913797	0.86[CHB][hapmap]
rs10913801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs10913805	0.94[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11809606	0.86[CHB][hapmap]
rs12047808	0.85[CHB][hapmap]
rs12133017	0.80[CHB][hapmap]
rs12136977	0.86[CHB][hapmap]
rs12137397	0.86[CHB][hapmap]
rs12138189	0.86[CHB][hapmap]
rs12216994	0.85[CHB][hapmap]
rs12216996	0.85[CHB][hapmap]
rs12724074	0.86[CHB][hapmap]
rs1329277	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1576225	0.86[CHB][hapmap]
rs1590784	1.00[ASN][1000 genomes]
rs1590786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs2225213	0.86[CHB][hapmap]
rs3898486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4268319	0.89[ASN][1000 genomes]
rs4297245	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4442334	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4504843	0.89[ASN][1000 genomes]
rs4625243	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4651038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[ASN][1000 genomes]
rs4652382	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6425558	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6425567	0.86[CHB][hapmap]
rs6668035	0.86[CHB][hapmap]
rs6672804	0.86[CHB][hapmap]
rs6674274	0.86[CHB][hapmap]
rs6683623	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7535800	0.86[CHB][hapmap]
rs7541905	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7544340	0.86[CHB][hapmap]
rs7546457	0.86[CHB][hapmap]
rs962429	0.86[CHB][hapmap]
rs9787089	0.86[CHB][hapmap]
rs9787118	0.86[CHB][hapmap]
rs9787120	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv15822	chr1:179467639-179469756	Inactive region	Chromatin interactive region	n/a	n/a	n/a
5	esv1832000	chr1:179467663-179474053	Inactive region	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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