Variant report
| Variant | rs59377201 |
|---|---|
| Chromosome Location | chr1:179461975-179461976 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr1:179461718-179462035 | IMR90 | lung: | n/a | chr1:179461839-179461849 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000269064 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10913751 | 0.91[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12216994 | 0.85[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12216996 | 0.85[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2274624 | 0.86[ASN][1000 genomes] |
| rs3818587 | 0.86[ASN][1000 genomes] |
| rs55998153 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56392198 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60323829 | 0.82[AFR][1000 genomes] |
| rs60408652 | 0.91[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73036715 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73036735 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73036755 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv1826150 | chr1:179455645-179469253 | Inactive region | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 4 | esv1820823 | chr1:179455645-179479803 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
