Variant report
| Variant | rs73036715 |
|---|---|
| Chromosome Location | chr1:179417735-179417736 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:14)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:14 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ZNF384 | chr1:179417675-179418305 | K562 | blood: | n/a | n/a |
| 2 | CCNT2 | chr1:179417639-179417843 | K562 | blood: | n/a | n/a |
| 3 | BHLHE40 | chr1:179417644-179417794 | K562 | blood: | n/a | chr1:179417771-179417787 |
| 4 | CTCF | chr1:179417603-179417829 | K562 | blood: | n/a | n/a |
| 5 | MYC | chr1:179417591-179418148 | K562 | blood: | n/a | n/a |
| 6 | HMGN3 | chr1:179417615-179417840 | K562 | blood: | n/a | n/a |
| 7 | RAD21 | chr1:179417692-179417856 | K562 | blood: | n/a | n/a |
| 8 | MAX | chr1:179417523-179417854 | K562 | blood: | n/a | n/a |
| 9 | CTCF | chr1:179417700-179417850 | K562 | blood: | n/a | n/a |
| 10 | MAX | chr1:179417629-179417860 | K562 | blood: | n/a | n/a |
| 11 | UBTF | chr1:179417616-179417838 | K562 | blood: | n/a | n/a |
| 12 | ARID3A | chr1:179417315-179418149 | K562 | blood: | n/a | n/a |
| 13 | E2F6 | chr1:179417649-179417864 | K562 | blood: | n/a | chr1:179417754-179417763 |
| 14 | MAX | chr1:179417610-179417825 | K562 | blood: | n/a | n/a |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SOAT1-3 | chr1:179417648-179417966 | NONHSAT007860 |
| 2 | lnc-SOAT1-3 | chr1:179417648-179417967 | NONHSAT007859 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MEF2AP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10913751 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13306729 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs55998153 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56253737 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56392198 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs59377201 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs60408652 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73036735 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73036755 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1819329 | chr1:179371973-179442337 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv548298 | chr1:179376896-179436288 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
| 5 | nsv946523 | chr1:179417249-179426389 | Enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179417600-179418000 | Active TSS | K562 | blood |
