Variant report

Variant	rs28508518
Chromosome Location	chr1:179456190-179456191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr1:179456091-179456217	U2OS	brain:	n/a	n/a
2	SETDB1	chr1:179455933-179456401	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
AXDND1	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10494520	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913758	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12073906	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12118625	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12132906	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12134114	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135209	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12140299	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140376	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12408477	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12736300	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12740270	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12740455	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12759446	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16854229	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2274623	0.80[ASN][1000 genomes]
rs2274625	0.80[ASN][1000 genomes]
rs35954891	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36068644	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4394601	0.87[ASN][1000 genomes]
rs61826054	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61826055	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61827681	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71514854	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9660720	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009624	chr1:179423063-179459676	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv1011557	chr1:179426390-179459460	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv548299	chr1:179452695-179456776	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv548300	chr1:179452695-179457436	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3320859	chr1:179453629-179458627	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3505460	chr1:179454429-179459077	Inactive region	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3505459	chr1:179454879-179459677	Inactive region	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv3320857	chr1:179455462-179458414	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
11	esv3505457	chr1:179455497-179458356	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
12	esv3505458	chr1:179455500-179458378	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
13	esv3320858	chr1:179455507-179458393	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
14	esv3320856	chr1:179455516-179458393	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
15	esv3505461	chr1:179455526-179458345	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
16	esv3320860	chr1:179455595-179458301	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
17	esv3505462	chr1:179455595-179458301	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
18	esv11393	chr1:179455634-179458332	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
19	nsv548301	chr1:179455645-179456812	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
20	nsv548302	chr1:179455645-179456967	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
21	nsv548303	chr1:179455645-179457124	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
22	nsv548304	chr1:179455645-179457309	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
23	esv1825502	chr1:179455645-179457436	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
24	nsv548305	chr1:179455645-179457436	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
25	nsv548306	chr1:179455645-179457618	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
26	nsv548307	chr1:179455645-179457732	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
27	nsv548308	chr1:179455645-179457914	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
28	nsv548309	chr1:179455645-179458073	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
29	nsv548310	chr1:179455645-179458205	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
30	esv1827311	chr1:179455645-179458821	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
31	esv1826150	chr1:179455645-179469253	Inactive region	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
32	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
33	nsv548311	chr1:179455769-179456967	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
34	nsv548312	chr1:179455769-179457309	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
35	nsv548313	chr1:179455769-179457436	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
36	nsv548314	chr1:179455769-179457618	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
37	nsv548315	chr1:179455769-179457732	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
38	nsv548316	chr1:179456046-179457309	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
39	nsv548317	chr1:179456046-179457436	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
40	nsv548318	chr1:179456046-179457618	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
41	nsv548319	chr1:179456046-179457732	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
42	nsv548320	chr1:179456046-179457914	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
43	nsv548321	chr1:179456046-179458205	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a
44	nsv548322	chr1:179456046-179458821	Inactive region	TF binding region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links