Variant report

Variant	rs9660720
Chromosome Location	chr1:179408939-179408940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179408823..179410527-chr1:179414662..179417302,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10494520	0.88[ASN][1000 genomes]
rs10753192	0.82[ASN][1000 genomes]
rs10798670	0.80[ASN][1000 genomes]
rs10913731	0.80[ASN][1000 genomes]
rs10913733	0.80[ASN][1000 genomes]
rs10913742	0.87[ASN][1000 genomes]
rs10913758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12047160	0.81[ASN][1000 genomes]
rs12073906	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073970	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12118625	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132906	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12134114	0.88[ASN][1000 genomes]
rs12135209	0.83[AMR][1000 genomes]
rs12138619	0.80[ASN][1000 genomes]
rs12140299	0.88[ASN][1000 genomes]
rs12140376	0.83[AMR][1000 genomes]
rs12144580	0.80[ASN][1000 genomes]
rs12408477	0.83[AMR][1000 genomes]
rs12736300	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12740270	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12740455	0.91[ASN][1000 genomes]
rs12759446	0.91[ASN][1000 genomes]
rs13374852	0.91[ASN][1000 genomes]
rs16854009	0.86[ASN][1000 genomes]
rs16854229	0.83[AMR][1000 genomes]
rs28508518	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35954891	0.88[ASN][1000 genomes]
rs36068644	0.88[ASN][1000 genomes]
rs4077551	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4077552	0.89[ASN][1000 genomes]
rs41315575	0.80[ASN][1000 genomes]
rs4394601	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59334094	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61822772	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61824395	0.80[ASN][1000 genomes]
rs61826054	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61826055	0.88[ASN][1000 genomes]
rs61827681	0.83[AMR][1000 genomes]
rs6425537	0.81[ASN][1000 genomes]
rs71514854	0.88[ASN][1000 genomes]
rs975025	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179405200-179413000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:179408800-179411400	Enhancers	Fetal Intestine Small	intestine

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