Variant report

Variant	rs4394601
Chromosome Location	chr1:179392121-179392122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10494520	0.87[ASN][1000 genomes]
rs10753192	0.83[ASN][1000 genomes]
rs10798662	0.80[ASN][1000 genomes]
rs10798670	0.81[ASN][1000 genomes]
rs10913731	0.82[ASN][1000 genomes]
rs10913732	0.81[ASN][1000 genomes]
rs10913733	0.82[ASN][1000 genomes]
rs10913742	0.88[ASN][1000 genomes]
rs10913758	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12047160	0.82[ASN][1000 genomes]
rs12073906	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12073970	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12118625	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12134114	0.87[ASN][1000 genomes]
rs12138619	0.82[ASN][1000 genomes]
rs12140299	0.87[ASN][1000 genomes]
rs12144580	0.82[ASN][1000 genomes]
rs12736300	0.91[ASN][1000 genomes]
rs12740270	0.91[ASN][1000 genomes]
rs12740455	0.90[ASN][1000 genomes]
rs12759446	0.90[ASN][1000 genomes]
rs13374852	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16854009	0.87[ASN][1000 genomes]
rs28508518	0.87[ASN][1000 genomes]
rs35954891	0.87[ASN][1000 genomes]
rs36068644	0.87[ASN][1000 genomes]
rs4077551	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4077552	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs41315575	0.81[ASN][1000 genomes]
rs59334094	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs61822772	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61824395	0.81[ASN][1000 genomes]
rs61826054	0.87[ASN][1000 genomes]
rs61826055	0.87[ASN][1000 genomes]
rs6425537	0.82[ASN][1000 genomes]
rs71514854	0.87[ASN][1000 genomes]
rs9660720	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs975025	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3514400	chr1:179349344-179400533	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3514401	chr1:179349344-179400533	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3451112	chr1:179352344-179400533	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179391600-179394800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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