Variant report

Variant	rs10913742
Chromosome Location	chr1:179350423-179350424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179335021..179336555-chr1:179350332..179352693,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162779	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10753192	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10798662	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10798670	0.88[ASN][1000 genomes]
rs10913731	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10913732	0.87[ASN][1000 genomes]
rs10913733	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10913737	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10913738	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10913758	0.87[ASN][1000 genomes]
rs12047160	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12073906	0.87[ASN][1000 genomes]
rs12073970	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12118625	0.87[ASN][1000 genomes]
rs12138619	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12144580	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13306731	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13374852	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16854009	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4077551	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4077552	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41315575	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4394601	0.88[ASN][1000 genomes]
rs59334094	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61822772	0.83[ASN][1000 genomes]
rs61824395	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6425537	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9660720	0.87[ASN][1000 genomes]
rs975025	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2762031	chr1:179323738-179375197	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	nsv518403	chr1:179323919-179371973	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv548279	chr1:179323919-179390148	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv3514400	chr1:179349344-179400533	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3514401	chr1:179349344-179400533	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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