Variant report

Variant	rs10798662
Chromosome Location	chr1:179312386-179312387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179311628..179313681-chr1:179315946..179318351,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10753192	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10798665	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs10798670	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10913731	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913732	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913733	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10913742	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12047160	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12073970	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12117333	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12138619	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12144580	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13306728	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13306731	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13374852	0.87[ASN][1000 genomes]
rs16854009	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3753526	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs4077551	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4077552	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41308413	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs41310929	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs41315575	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4394601	0.80[ASN][1000 genomes]
rs59334094	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61824395	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6425537	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7523799	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs975025	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3360131	chr1:179312265-179312830	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179264600-179314000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:179264600-179314000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:179264800-179313800	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:179264800-179313800	Weak transcription	Fetal Brain Female	brain
5	chr1:179264800-179334200	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:179266400-179322800	Weak transcription	Small Intestine	intestine
7	chr1:179272600-179313800	Weak transcription	Brain Anterior Caudate	brain
8	chr1:179280400-179314000	Weak transcription	NHLF	lung
9	chr1:179282000-179313000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:179282400-179313800	Weak transcription	HSMMtube	muscle
11	chr1:179286400-179313800	Weak transcription	Psoas Muscle	Psoas
12	chr1:179290800-179314000	Weak transcription	NHEK	skin
13	chr1:179292400-179328000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:179293000-179322600	Weak transcription	Fetal Heart	heart
15	chr1:179293600-179313800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:179293800-179314000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr1:179294200-179324600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:179295600-179314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:179296800-179327800	Weak transcription	Colonic Mucosa	Colon
20	chr1:179297400-179313600	Weak transcription	Spleen	Spleen
21	chr1:179297400-179321600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:179298600-179324200	Weak transcription	Thymus	Thymus
23	chr1:179299400-179316800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:179299600-179312400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:179300200-179313800	Weak transcription	Primary B cells from cord blood	blood
26	chr1:179300200-179314800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:179300400-179334600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr1:179300600-179322400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:179301800-179322800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:179303000-179314000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:179303200-179324600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:179303400-179322600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:179303600-179314200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr1:179304000-179313800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:179304200-179316000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:179304200-179316600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:179304200-179320000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:179304200-179324400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:179304200-179324400	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr1:179304200-179324600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:179304200-179325200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr1:179304400-179318400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr1:179304400-179324400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr1:179304600-179316000	Strong transcription	Hela-S3	cervix
45	chr1:179304600-179324200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr1:179305200-179315800	Weak transcription	Brain Germinal Matrix	brain
47	chr1:179305200-179327200	Weak transcription	Right Ventricle	heart
48	chr1:179305400-179312400	Weak transcription	Fetal Intestine Small	intestine
49	chr1:179305600-179313600	Weak transcription	Lung	lung
50	chr1:179305600-179334200	Weak transcription	Pancreas	Pancrea

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