Variant report

Variant	rs2636266
Chromosome Location	chr1:179199652-179199653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr1:179199422-179199804	MCF10A-Er-Src	breast:	n/a	chr1:179199543-179199554
2	TBL1XR1	chr1:179199469-179199698	K562	blood:	n/a	n/a
3	MXI1	chr1:179199485-179199680	K562	blood:	n/a	n/a
4	E2F4	chr1:179199166-179199780	MCF10A-Er-Src	breast:	n/a	n/a
5	ARID3A	chr1:179199136-179200040	K562	blood:	n/a	n/a
6	MAFK	chr1:179199499-179199833	Hela-S3	cervix:	n/a	chr1:179199670-179199680
7	RCOR1	chr1:179199589-179199714	K562	blood:	n/a	n/a
8	FOS	chr1:179199471-179199856	MCF10A-Er-Src	breast:	n/a	chr1:179199681-179199692
9	MYC	chr1:179198066-179200154	K562	blood:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179198198-179198208 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
10	POLR2A	chr1:179199418-179199733	SK-N-SH	brain:	n/a	n/a
11	MYC	chr1:179199012-179199802	MCF10A-Er-Src	breast:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
12	USF1	chr1:179199500-179199783	A549	lung:	n/a	n/a
13	USF1	chr1:179199464-179199747	A549	lung:	n/a	n/a
14	JUND	chr1:179199017-179200171	K562	blood:	n/a	n/a
15	MAX	chr1:179197942-179199881	HCT-116	colon:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179198198-179198208 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
16	MAX	chr1:179198690-179199848	SK-N-SH	brain:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
17	MXI1	chr1:179197473-179200615	SK-N-SH	brain:	n/a	n/a
18	FOS	chr1:179199360-179199955	MCF10A-Er-Src	breast:	n/a	chr1:179199681-179199692
19	USF1	chr1:179199415-179199763	SK-N-SH_RA	brain:	n/a	n/a
20	USF1	chr1:179199363-179199758	K562	blood:	n/a	n/a
21	USF2	chr1:179199359-179199769	Hela-S3	cervix:	n/a	n/a
22	FOSL2	chr1:179199385-179199977	SK-N-SH	brain:	n/a	n/a
23	MAX	chr1:179198748-179199915	SK-N-SH	brain:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
24	USF1	chr1:179199414-179199820	SK-N-SH	brain:	n/a	n/a
25	MAX	chr1:179199015-179199996	A549	lung:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
26	STAT3	chr1:179199217-179199749	MCF10A-Er-Src	breast:	n/a	chr1:179199543-179199554
27	MAX	chr1:179198199-179199655	K562	blood:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
28	BHLHE40	chr1:179199120-179199730	K562	blood:	n/a	n/a
29	MXI1	chr1:179197662-179200166	IMR90	lung:	n/a	n/a
30	MAFK	chr1:179199472-179199870	IMR90	lung:	n/a	chr1:179199670-179199680
31	MAX	chr1:179197802-179199825	Hela-S3	cervix:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179198198-179198208 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
32	USF1	chr1:179199480-179199735	K562	blood:	n/a	n/a
33	EP300	chr1:179199495-179200290	K562	blood:	n/a	chr1:179199505-179199514
34	BACH1	chr1:179199309-179199782	K562	blood:	n/a	n/a
35	USF1	chr1:179199371-179199798	A549	lung:	n/a	n/a
36	MXI1	chr1:179199063-179199823	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr1:179199073-179199698	MCF10A-Er-Src	breast:	n/a	n/a
38	MAX	chr1:179199449-179199717	K562	blood:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
39	MAZ	chr1:179197668-179199848	IMR90	lung:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179198198-179198208 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
40	RCOR1	chr1:179199499-179199695	K562	blood:	n/a	n/a
41	MAX	chr1:179197850-179200001	A549	lung:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179198198-179198208 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
42	MAFK	chr1:179199172-179199776	K562	blood:	n/a	chr1:179199670-179199680
43	MAX	chr1:179199377-179199796	K562	blood:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
44	FOS	chr1:179199445-179199894	MCF10A-Er-Src	breast:	n/a	chr1:179199681-179199692
45	MYC	chr1:179199050-179200092	MCF10A-Er-Src	breast:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
46	MAX	chr1:179198596-179199940	A549	lung:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
47	MAX	chr1:179198961-179199716	NB4	blood:	n/a	chr1:179199609-179199619 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619
48	RAD21	chr1:179199550-179200051	IMR90	lung:	n/a	n/a
49	USF1	chr1:179199434-179199743	SK-N-SH_RA	brain:	n/a	n/a
50	MYC	chr1:179197723-179200253	K562	blood:	n/a	chr1:179199609-179199619 chr1:179198329-179198339 chr1:179199610-179199617 chr1:179199607-179199620 chr1:179199609-179199618 chr1:179198198-179198208 chr1:179199608-179199618 chr1:179199605-179199620 chr1:179199191-179199198 chr1:179199610-179199619 chr1:179199607-179199622 chr1:179199608-179199619

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:179199613-179199663	NHDF-neo	bronchial:	n/a
2	chr1:179199613-179199663	AG09319	gingival:	n/a
3	chr1:179199613-179199663	HCM	heart:	n/a
4	chr1:179199613-179199663	Jurkat	blood:	n/a
5	chr1:179199613-179199663	GM12892	blood:	n/a
6	chr1:179199613-179199663	Hepatocyte	liver:	n/a
7	chr1:179199613-179199663	MCF-7	breast:	n/a
8	chr1:179199613-179199663	HRE	kidney:	n/a
9	chr1:179199613-179199663	HPAEpiC	pulmonary alveolar:	n/a
10	chr1:179199613-179199663	CMK	blood:	n/a
11	chr1:179199613-179199663	HEK293	kidney:	embryo
12	chr1:179199613-179199663	HL-60	blood:	n/a
13	chr1:179199613-179199663	ECC-1	luminal epithelium:	n/a
14	chr1:179199613-179199663	BE2_C	brain:	n/a
15	chr1:179199613-179199663	NH-A	brain:	n/a
16	chr1:179199613-179199663	SAEC	small airway:	n/a
17	chr1:179199613-179199663	GM06990	blood:	n/a
18	chr1:179199613-179199663	MCF10A-Er-Src	breast:	n/a
19	chr1:179199613-179199663	HCT-116	colon:	n/a
20	chr1:179199613-179199663	U87	brain:	n/a
21	chr1:179199613-179199663	ProgFib	skin:	n/a
22	chr1:179199613-179199663	RPTEC	kidney:	n/a
23	chr1:179199613-179199663	ovcar-3	ovarian:	n/a
24	chr1:179199613-179199663	AG10803	skin:	n/a
25	chr1:179199613-179199663	HNPCEpiC	eye:	n/a
26	chr1:179199613-179199663	IMR90	lung:	fetal
27	chr1:179199613-179199663	PrEC	prostate:	n/a
28	chr1:179199613-179199663	AoSMC	blood vessel:	n/a
29	chr1:179199613-179199663	SK-N-MC	brain:	n/a
30	chr1:179199613-179199663	HCPEpiC	choroid plexus:	n/a
31	chr1:179199613-179199663	H1-hESC	embryonic stem cell:	embryo
32	chr1:179199613-179199663	SK-N-SH_RA	brain:	n/a
33	chr1:179199613-179199663	HIPEpiC	eye:	n/a
34	chr1:179199613-179199663	Hela-S3	cervix:	n/a
35	chr1:179199613-179199663	HEEpiC	esophagus:	n/a
36	chr1:179199613-179199663	NT2-D1	testis:	n/a
37	chr1:179199613-179199663	AG04449	skin:	fetal
38	chr1:179199613-179199663	HepG2	liver:	n/a
39	chr1:179199613-179199663	HAEpiC	amniotic membrane:	n/a
40	chr1:179199613-179199663	LNCaP	prostate:	n/a
41	chr1:179199613-179199663	SK-N-SH	brain:	n/a
42	chr1:179199613-179199663	GM12891	blood:	n/a
43	chr1:179199613-179199663	K562	blood:	n/a
44	chr1:179199613-179199663	HRCEpiC	kidney:	n/a
45	chr1:179199613-179199663	Caco-2	colon:	n/a
46	chr1:179199613-179199663	HRPEpiC	eye:	n/a
47	chr1:179199613-179199663	PFSK-1	brain:	n/a
48	chr1:179199613-179199663	AG04450	lung:	fetal
49	chr1:179199613-179199663	BJ	skin:	n/a
50	chr1:179199613-179199663	NB4	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:179198544..179200421-chr1:179334252..179336417,2	MCF-7	breast:
2	chr1:179189295..179193775-chr1:179196197..179201101,5	K562	blood:
3	chr1:179188599..179190144-chr1:179197953..179200570,2	MCF-7	breast:
4	chr1:179168461..179170793-chr1:179198127..179200126,2	MCF-7	breast:
5	chr1:179187242..179191261-chr1:179196503..179201085,5	MCF-7	breast:
6	chr1:179194698..179198189-chr1:179199454..179203395,4	K562	blood:

Variant related genes	Relation type
ABL2	TF binding region
ABL2	CpG island
ENSG00000162779	Chromatin interaction
ENSG00000225711	Chromatin interaction
ENSG00000201619	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1046385	1.00[ASW][hapmap];0.94[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs1078872	0.88[GIH][hapmap]
rs10798670	0.81[CHB][hapmap]
rs10913690	0.83[GIH][hapmap]
rs10913691	0.87[EUR][1000 genomes]
rs10913697	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs10913733	0.81[CHB][hapmap]
rs1173077	0.81[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap]
rs12022539	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12026030	0.81[EUR][1000 genomes]
rs12028643	0.81[EUR][1000 genomes]
rs12031894	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12035050	0.82[EUR][1000 genomes]
rs12045521	0.82[EUR][1000 genomes]
rs12049237	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12073970	0.86[CHB][hapmap]
rs12130276	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs12402165	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12404921	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12405133	0.81[CHB][hapmap]
rs12408349	1.00[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12408668	0.81[EUR][1000 genomes]
rs1325194	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs13306731	0.81[CHB][hapmap]
rs13374852	0.81[CHB][hapmap]
rs1475798	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs16853917	0.95[CEU][hapmap]
rs16853936	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs17362081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1856968	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2050922	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2066162	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2130576	0.88[GIH][hapmap];0.80[TSI][hapmap]
rs2152317	0.95[CEU][hapmap]
rs2171959	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2493124	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2636274	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2636276	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs2636278	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2636280	0.88[GIH][hapmap];0.80[TSI][hapmap]
rs2636281	0.81[AMR][1000 genomes]
rs2636287	0.84[JPT][hapmap]
rs2636289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2636290	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2791941	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs2793791	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2793796	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2793797	0.88[GIH][hapmap];0.82[TSI][hapmap]
rs2793799	0.81[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap]
rs2793804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793805	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793808	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2793812	0.85[GIH][hapmap];0.80[TSI][hapmap]
rs2793816	0.88[GIH][hapmap]
rs2816167	0.81[AMR][1000 genomes]
rs2816179	0.88[EUR][1000 genomes]
rs2816180	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2816203	0.88[GIH][hapmap];0.80[TSI][hapmap]
rs2816206	0.81[AMR][1000 genomes]
rs2816209	0.92[GIH][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes]
rs2816213	0.88[GIH][hapmap];0.80[TSI][hapmap]
rs3122378	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3210839	0.87[GIH][hapmap];0.81[JPT][hapmap]
rs3753524	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs380951	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3813642	0.83[GIH][hapmap]
rs3813643	0.83[GIH][hapmap]
rs3818433	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs4077551	0.81[CHB][hapmap]
rs4077552	0.81[CHB][hapmap]
rs410589	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4133136	0.80[CHB][hapmap]
rs413881	0.84[EUR][1000 genomes]
rs425858	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4478776	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs451088	0.90[GIH][hapmap];0.80[TSI][hapmap]
rs4651014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs58284152	0.81[EUR][1000 genomes]
rs58948941	0.86[AFR][1000 genomes]
rs59777301	1.00[AFR][1000 genomes]
rs60595009	0.81[EUR][1000 genomes]
rs61821690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61821735	0.83[EUR][1000 genomes]
rs61821739	0.81[EUR][1000 genomes]
rs61821740	0.81[EUR][1000 genomes]
rs61824363	0.81[EUR][1000 genomes]
rs61824364	0.81[EUR][1000 genomes]
rs61824368	1.00[AFR][1000 genomes]
rs61824371	0.82[EUR][1000 genomes]
rs61824388	0.82[EUR][1000 genomes]
rs61824389	0.82[EUR][1000 genomes]
rs6425512	1.00[ASW][hapmap]
rs6675772	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7414502	0.81[EUR][1000 genomes]
rs7544801	1.00[ASW][hapmap]
rs7547733	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs915337	0.90[GIH][hapmap];0.80[TSI][hapmap]
rs931441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9728480	0.88[GIH][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3441716	chr1:179197554-179200302	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2636266	IER5	cis	cerebellum	SCAN
rs2636266	LHX4	cis	parietal	SCAN
rs2636266	ABL2	cis	parietal	SCAN
rs2636266	ABL2	cis	cerebellum	SCAN
rs2636266	FAM20B	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179197600-179199800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:179197600-179199800	Active TSS	NHLF	lung
3	chr1:179198200-179199800	Active TSS	Fetal Lung	lung
4	chr1:179199000-179199800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:179199000-179199800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:179199000-179199800	Flanking Active TSS	HUVEC	blood vessel
7	chr1:179199000-179200000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr1:179199000-179200200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr1:179199000-179200200	Flanking Active TSS	NH-A	brain
10	chr1:179199200-179199800	Flanking Active TSS	Brain Angular Gyrus	brain
11	chr1:179199200-179199800	Flanking Active TSS	Hela-S3	cervix
12	chr1:179199200-179199800	Flanking Active TSS	HepG2	liver
13	chr1:179199200-179200000	Flanking Active TSS	Osteobl	bone
14	chr1:179199200-179200200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:179199200-179200200	Flanking Active TSS	K562	blood
16	chr1:179199400-179199800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:179199400-179199800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
18	chr1:179199400-179199800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:179199400-179199800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr1:179199400-179199800	Flanking Active TSS	Fetal Brain Female	brain
21	chr1:179199400-179199800	Enhancers	Dnd41	blood
22	chr1:179199400-179200000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:179199400-179200000	Enhancers	Colon Smooth Muscle	Colon
24	chr1:179199400-179200000	Enhancers	Fetal Brain Male	brain
25	chr1:179199400-179200000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr1:179199400-179200200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:179199400-179200200	Enhancers	Rectal Smooth Muscle	rectum
28	chr1:179199400-179200200	Flanking Active TSS	A549	lung
29	chr1:179199400-179200400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr1:179199400-179201400	Weak transcription	HSMM	muscle
31	chr1:179199400-179210000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:179199600-179199800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:179199600-179199800	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr1:179199600-179199800	Enhancers	Primary T cells from cord blood	blood
35	chr1:179199600-179199800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr1:179199600-179199800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:179199600-179199800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:179199600-179199800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:179199600-179199800	Enhancers	Adipose Nuclei	Adipose
40	chr1:179199600-179199800	Enhancers	Brain Anterior Caudate	brain
41	chr1:179199600-179199800	Enhancers	Brain Hippocampus Middle	brain
42	chr1:179199600-179199800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:179199600-179199800	Enhancers	Brain Substantia Nigra	brain
44	chr1:179199600-179200000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
45	chr1:179199600-179200000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:179199600-179200000	Enhancers	Brain Cingulate Gyrus	brain
47	chr1:179199600-179200200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr1:179199600-179200200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr1:179199600-179200200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:179199600-179200200	Enhancers	Duodenum Mucosa	Duodenum

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