Variant report

Variant	rs2066162
Chromosome Location	chr1:179138608-179138609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10913691	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1325194	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17362081	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050922	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636266	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2636278	0.83[ASN][1000 genomes]
rs2636289	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636290	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2793791	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793804	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2793805	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2793807	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2793808	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2816179	0.82[EUR][1000 genomes]
rs380951	0.88[EUR][1000 genomes]
rs3818433	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs425858	0.88[EUR][1000 genomes]
rs4478776	0.88[EUR][1000 genomes]
rs4651014	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61821690	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs931441	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179112400-179139000	Weak transcription	K562	blood
2	chr1:179117800-179186000	Weak transcription	Fetal Stomach	stomach
3	chr1:179122000-179139000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
5	chr1:179122400-179153000	Weak transcription	Primary T cells from cord blood	blood
6	chr1:179122800-179139000	Weak transcription	Lung	lung
7	chr1:179122800-179141600	Weak transcription	Fetal Intestine Large	intestine
8	chr1:179124200-179139000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:179127400-179139200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:179132600-179139000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:179134000-179139000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:179134000-179146600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:179134000-179169000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:179134200-179139400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:179134600-179139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:179134600-179139200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:179134600-179139200	Weak transcription	HepG2	liver
18	chr1:179134800-179138800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:179134800-179138800	Weak transcription	HMEC	breast
20	chr1:179135000-179139000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:179135200-179138800	Weak transcription	NHEK	skin
22	chr1:179135600-179139000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:179135600-179139600	Enhancers	HSMM	muscle
24	chr1:179136400-179144400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr1:179136600-179138800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr1:179136600-179139000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:179136600-179139000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:179136600-179139000	Weak transcription	Adipose Nuclei	Adipose
29	chr1:179136600-179139000	Weak transcription	Brain Anterior Caudate	brain
30	chr1:179136600-179139000	Weak transcription	Colon Smooth Muscle	Colon
31	chr1:179136600-179139000	Enhancers	NHDF-Ad	bronchial
32	chr1:179136600-179140600	Weak transcription	Psoas Muscle	Psoas
33	chr1:179136800-179139400	Weak transcription	Brain Germinal Matrix	brain
34	chr1:179136800-179146200	Weak transcription	Fetal Heart	heart
35	chr1:179137200-179139000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:179137400-179139000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr1:179137600-179139000	Enhancers	Osteobl	bone
38	chr1:179137600-179139400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr1:179137800-179139000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:179137800-179139000	Enhancers	NH-A	brain
41	chr1:179138000-179139000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:179138200-179139600	Enhancers	Hela-S3	cervix
43	chr1:179138200-179144400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr1:179138400-179138800	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr1:179138400-179138800	Weak transcription	HSMMtube	muscle
46	chr1:179138400-179138800	Weak transcription	NHLF	lung
47	chr1:179138400-179139400	Enhancers	Aorta	Aorta
48	chr1:179138400-179139600	Enhancers	A549	lung
49	chr1:179138600-179139000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:179138600-179139800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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