Variant report

Variant	rs2816179
Chromosome Location	chr1:179250921-179250922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs12022539	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12026030	0.91[EUR][1000 genomes]
rs12028643	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12031894	0.91[EUR][1000 genomes]
rs12035050	0.86[EUR][1000 genomes]
rs12039884	0.86[EUR][1000 genomes]
rs12045521	0.86[EUR][1000 genomes]
rs12049122	0.91[EUR][1000 genomes]
rs12049237	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12402165	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12404921	0.91[EUR][1000 genomes]
rs12408349	0.94[EUR][1000 genomes]
rs12408668	0.86[EUR][1000 genomes]
rs1475798	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16853917	0.88[EUR][1000 genomes]
rs16853936	0.86[EUR][1000 genomes]
rs17362081	0.80[EUR][1000 genomes]
rs2066162	0.82[EUR][1000 genomes]
rs2068234	0.88[EUR][1000 genomes]
rs2152317	0.88[EUR][1000 genomes]
rs2636266	0.88[EUR][1000 genomes]
rs2636289	0.89[EUR][1000 genomes]
rs2636290	0.80[EUR][1000 genomes]
rs2793804	0.89[EUR][1000 genomes]
rs2793805	0.89[EUR][1000 genomes]
rs2793807	0.89[EUR][1000 genomes]
rs2793808	0.89[EUR][1000 genomes]
rs2816180	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs3122378	0.81[EUR][1000 genomes]
rs3753524	0.86[EUR][1000 genomes]
rs380951	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs3818433	0.80[EUR][1000 genomes]
rs410589	0.81[EUR][1000 genomes]
rs413881	0.94[EUR][1000 genomes]
rs425858	0.94[EUR][1000 genomes]
rs4478776	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs58284152	0.86[EUR][1000 genomes]
rs58948941	0.87[EUR][1000 genomes]
rs59777301	0.86[EUR][1000 genomes]
rs60595009	0.86[EUR][1000 genomes]
rs61821690	0.89[EUR][1000 genomes]
rs61821735	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61821737	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61821738	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61821739	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61821740	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61824363	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61824364	0.92[EUR][1000 genomes]
rs61824365	0.91[EUR][1000 genomes]
rs61824368	0.87[EUR][1000 genomes]
rs61824371	0.86[EUR][1000 genomes]
rs61824388	0.86[EUR][1000 genomes]
rs61824389	0.86[EUR][1000 genomes]
rs6675772	0.91[EUR][1000 genomes]
rs6694339	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7414502	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs931441	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179250400-179251000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:179250800-179256600	Weak transcription	HepG2	liver

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