The 2.0 version of rSNPBase

Variant report

Variant rs16853917
Chromosome Location chr1:179296218-179296219
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264600-179304600 Weak transcription Right Ventricle heart
4 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
5 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
6 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
8 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
9 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
10 chr1:179266400-179322800 Weak transcription Small Intestine intestine
11 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
12 chr1:179272600-179313800 Weak transcription Brain Anterior Caudate brain
13 chr1:179273000-179311600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr1:179274600-179302400 Weak transcription Left Ventricle heart
15 chr1:179274600-179304400 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr1:179274600-179306000 Weak transcription Stomach Smooth Muscle stomach
17 chr1:179275600-179311600 Weak transcription HUVEC blood vessel
18 chr1:179276400-179306200 Weak transcription Fetal Muscle Trunk muscle
19 chr1:179276600-179304800 Weak transcription Pancreas Pancrea
20 chr1:179277600-179296400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:179280400-179314000 Weak transcription NHLF lung
22 chr1:179280600-179299000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:179281200-179300200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:179282000-179313000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:179282400-179304200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:179282400-179313800 Weak transcription HSMMtube muscle
27 chr1:179283200-179298800 Weak transcription HepG2 liver
28 chr1:179283200-179308600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:179286400-179313800 Weak transcription Psoas Muscle Psoas
30 chr1:179287200-179297200 Weak transcription Spleen Spleen
31 chr1:179287400-179304400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
32 chr1:179287600-179299000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr1:179289000-179299200 Weak transcription Fetal Stomach stomach
34 chr1:179290000-179297800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr1:179290200-179297800 Strong transcription Primary T cells fromperipheralblood blood
36 chr1:179290200-179297800 Weak transcription Fetal Intestine Small intestine
37 chr1:179290200-179300000 Strong transcription Primary T cells from cord blood blood
38 chr1:179290200-179300200 Strong transcription Hela-S3 cervix
39 chr1:179290400-179310000 Weak transcription Aorta Aorta
40 chr1:179290600-179298200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
41 chr1:179290600-179298600 Weak transcription Primary hematopoietic stem cells blood
42 chr1:179290600-179304200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
43 chr1:179290600-179308800 Weak transcription Fetal Muscle Leg muscle
44 chr1:179290800-179298600 Weak transcription A549 lung
45 chr1:179290800-179298800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:179290800-179298800 Weak transcription Fetal Intestine Large intestine
47 chr1:179290800-179314000 Weak transcription NHEK skin
48 chr1:179291000-179297800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:179291000-179306000 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr1:179291200-179297600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015