The 2.0 version of rSNPBase

Variant report

Variant rs12049237
Chromosome Location chr1:179269549-179269550
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264000-179271400 Weak transcription Fetal Muscle Trunk muscle
4 chr1:179264000-179279600 Weak transcription Fetal Brain Male brain
5 chr1:179264200-179290200 Weak transcription Aorta Aorta
6 chr1:179264400-179271400 Weak transcription Left Ventricle heart
7 chr1:179264600-179271400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
8 chr1:179264600-179271400 Weak transcription Fetal Stomach stomach
9 chr1:179264600-179271600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:179264600-179271600 Weak transcription Psoas Muscle Psoas
11 chr1:179264600-179271600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr1:179264600-179272000 Weak transcription Stomach Smooth Muscle stomach
13 chr1:179264600-179272800 Weak transcription Fetal Lung lung
14 chr1:179264600-179273400 Weak transcription Fetal Intestine Small intestine
15 chr1:179264600-179273400 Weak transcription Fetal Muscle Leg muscle
16 chr1:179264600-179274200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr1:179264600-179275000 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr1:179264600-179278600 Weak transcription Colonic Mucosa Colon
19 chr1:179264600-179281200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:179264600-179292000 Weak transcription Rectal Smooth Muscle rectum
21 chr1:179264600-179304600 Weak transcription Right Ventricle heart
22 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
23 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
24 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
25 chr1:179264800-179270400 Enhancers Primary T helper cells fromperipheralblood blood
26 chr1:179264800-179271400 Enhancers Primary T helper naive cells from peripheral blood blood
27 chr1:179264800-179271400 Weak transcription Fetal Intestine Large intestine
28 chr1:179264800-179271600 Enhancers Primary T killer naive cells fromperipheralblood blood
29 chr1:179264800-179271600 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr1:179264800-179271600 Weak transcription HMEC breast
31 chr1:179264800-179271800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:179264800-179271800 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:179264800-179272000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:179264800-179272000 Weak transcription Brain Anterior Caudate brain
35 chr1:179264800-179272000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr1:179264800-179272000 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr1:179264800-179272200 Weak transcription Adipose Nuclei Adipose
38 chr1:179264800-179272200 Weak transcription HSMM muscle
39 chr1:179264800-179272200 Weak transcription NHLF lung
40 chr1:179264800-179273400 Weak transcription Ovary ovary
41 chr1:179264800-179276200 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr1:179264800-179276400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
43 chr1:179264800-179277800 Weak transcription Brain Cingulate Gyrus brain
44 chr1:179264800-179278800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr1:179264800-179279400 Weak transcription HSMMtube muscle
46 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
47 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
48 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
49 chr1:179265000-179271800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
50 chr1:179265000-179272000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015