The 2.0 version of rSNPBase

Variant report

Variant rs1475798
Chromosome Location chr1:179280023-179280024
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264200-179290200 Weak transcription Aorta Aorta
4 chr1:179264600-179281200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:179264600-179292000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:179264600-179304600 Weak transcription Right Ventricle heart
7 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
8 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
9 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
10 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
11 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
12 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
13 chr1:179265400-179287600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:179266400-179286400 Weak transcription Fetal Kidney kidney
15 chr1:179266400-179322800 Weak transcription Small Intestine intestine
16 chr1:179267800-179287000 Weak transcription Spleen Spleen
17 chr1:179268400-179280200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
19 chr1:179270200-179283200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr1:179271400-179287600 Weak transcription HUES6 Cell Line embryonic stem cell
21 chr1:179271600-179283800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
22 chr1:179271600-179286400 Strong transcription Primary T helper cells fromperipheralblood blood
23 chr1:179271800-179280200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr1:179271800-179287600 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr1:179272000-179284400 Strong transcription Primary T regulatory cells fromperipheralblood blood
26 chr1:179272000-179286000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:179272600-179288200 Weak transcription Stomach Mucosa stomach
28 chr1:179272600-179313800 Weak transcription Brain Anterior Caudate brain
29 chr1:179273000-179281400 Weak transcription Adipose Nuclei Adipose
30 chr1:179273000-179311600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr1:179273200-179290400 Weak transcription Pancreatic Islets Pancreatic Islet
32 chr1:179273200-179294600 Weak transcription Placenta Placenta
33 chr1:179273400-179287000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr1:179273800-179293400 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:179274400-179281200 Weak transcription Primary hematopoietic stem cells blood
36 chr1:179274400-179289400 Weak transcription Fetal Lung lung
37 chr1:179274600-179281600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr1:179274600-179284200 Weak transcription Fetal Intestine Small intestine
39 chr1:179274600-179302400 Weak transcription Left Ventricle heart
40 chr1:179274600-179304400 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr1:179274600-179306000 Weak transcription Stomach Smooth Muscle stomach
42 chr1:179274800-179281400 Weak transcription GM12878-XiMat blood
43 chr1:179275200-179281600 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr1:179275600-179311600 Weak transcription HUVEC blood vessel
45 chr1:179276400-179306200 Weak transcription Fetal Muscle Trunk muscle
46 chr1:179276600-179281600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr1:179276600-179281600 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:179276600-179282000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:179276600-179283200 Weak transcription Cortex derived primary cultured neurospheres brain
50 chr1:179276600-179304800 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015