The 2.0 version of rSNPBase

Variant report

Variant rs61824371
Chromosome Location chr1:179306086-179306087
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179306400 Weak transcription Gastric stomach
2 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
3 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
4 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
5 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
6 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
7 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
8 chr1:179266400-179322800 Weak transcription Small Intestine intestine
9 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
10 chr1:179272600-179313800 Weak transcription Brain Anterior Caudate brain
11 chr1:179273000-179311600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:179275600-179311600 Weak transcription HUVEC blood vessel
13 chr1:179276400-179306200 Weak transcription Fetal Muscle Trunk muscle
14 chr1:179280400-179314000 Weak transcription NHLF lung
15 chr1:179282000-179313000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:179282400-179313800 Weak transcription HSMMtube muscle
17 chr1:179283200-179308600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr1:179286400-179313800 Weak transcription Psoas Muscle Psoas
19 chr1:179290400-179310000 Weak transcription Aorta Aorta
20 chr1:179290600-179308800 Weak transcription Fetal Muscle Leg muscle
21 chr1:179290800-179314000 Weak transcription NHEK skin
22 chr1:179292200-179307200 Weak transcription Adipose Nuclei Adipose
23 chr1:179292400-179328000 Weak transcription Rectal Smooth Muscle rectum
24 chr1:179292600-179307400 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:179293000-179311800 Weak transcription Fetal Kidney kidney
26 chr1:179293000-179322600 Weak transcription Fetal Heart heart
27 chr1:179293600-179313800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:179293800-179311800 Weak transcription HMEC breast
29 chr1:179293800-179314000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr1:179294000-179306600 Weak transcription Osteobl bone
31 chr1:179294200-179324600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr1:179295600-179309000 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr1:179295600-179314000 Weak transcription Primary T killer memory cells from peripheral blood blood
34 chr1:179296800-179308600 Weak transcription NH-A brain
35 chr1:179296800-179327800 Weak transcription Colonic Mucosa Colon
36 chr1:179297400-179313600 Weak transcription Spleen Spleen
37 chr1:179297400-179321600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:179297800-179311800 Weak transcription Muscle Satellite Cultured Cells --
39 chr1:179298600-179311400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:179298600-179324200 Weak transcription Thymus Thymus
41 chr1:179299200-179306200 Weak transcription Duodenum Mucosa Duodenum
42 chr1:179299400-179306200 Weak transcription Fetal Lung lung
43 chr1:179299400-179308600 Weak transcription Fetal Intestine Large intestine
44 chr1:179299400-179308600 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr1:179299400-179310000 Weak transcription Primary B cells from peripheral blood blood
46 chr1:179299400-179316800 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr1:179299600-179312400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:179300000-179308600 Weak transcription A549 lung
49 chr1:179300200-179308600 Weak transcription GM12878-XiMat blood
50 chr1:179300200-179313800 Weak transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015