The 2.0 version of rSNPBase

Variant report

Variant rs61824368
Chromosome Location chr1:179298809-179298810
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264600-179304600 Weak transcription Right Ventricle heart
4 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
5 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
6 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
7 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
8 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
9 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
10 chr1:179266400-179322800 Weak transcription Small Intestine intestine
11 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
12 chr1:179272600-179313800 Weak transcription Brain Anterior Caudate brain
13 chr1:179273000-179311600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr1:179274600-179302400 Weak transcription Left Ventricle heart
15 chr1:179274600-179304400 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr1:179274600-179306000 Weak transcription Stomach Smooth Muscle stomach
17 chr1:179275600-179311600 Weak transcription HUVEC blood vessel
18 chr1:179276400-179306200 Weak transcription Fetal Muscle Trunk muscle
19 chr1:179276600-179304800 Weak transcription Pancreas Pancrea
20 chr1:179280400-179314000 Weak transcription NHLF lung
21 chr1:179280600-179299000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:179281200-179300200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:179282000-179313000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr1:179282400-179304200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
25 chr1:179282400-179313800 Weak transcription HSMMtube muscle
26 chr1:179283200-179308600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:179286400-179313800 Weak transcription Psoas Muscle Psoas
28 chr1:179287400-179304400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
29 chr1:179287600-179299000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
30 chr1:179289000-179299200 Weak transcription Fetal Stomach stomach
31 chr1:179290200-179300000 Strong transcription Primary T cells from cord blood blood
32 chr1:179290200-179300200 Strong transcription Hela-S3 cervix
33 chr1:179290400-179310000 Weak transcription Aorta Aorta
34 chr1:179290600-179304200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr1:179290600-179308800 Weak transcription Fetal Muscle Leg muscle
36 chr1:179290800-179314000 Weak transcription NHEK skin
37 chr1:179291000-179306000 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:179291400-179304800 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:179292000-179299000 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr1:179292000-179304800 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:179292200-179299000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:179292200-179307200 Weak transcription Adipose Nuclei Adipose
43 chr1:179292400-179299400 Strong transcription Liver Liver
44 chr1:179292400-179300000 Strong transcription Primary T helper cells fromperipheralblood blood
45 chr1:179292400-179328000 Weak transcription Rectal Smooth Muscle rectum
46 chr1:179292600-179307400 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:179293000-179304400 Weak transcription Ovary ovary
48 chr1:179293000-179311800 Weak transcription Fetal Kidney kidney
49 chr1:179293000-179322600 Weak transcription Fetal Heart heart
50 chr1:179293200-179304600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015