The 2.0 version of rSNPBase

Variant report

Variant rs12022539
Chromosome Location chr1:179275579-179275580
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264000-179279600 Weak transcription Fetal Brain Male brain
4 chr1:179264200-179290200 Weak transcription Aorta Aorta
5 chr1:179264600-179278600 Weak transcription Colonic Mucosa Colon
6 chr1:179264600-179281200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr1:179264600-179292000 Weak transcription Rectal Smooth Muscle rectum
8 chr1:179264600-179304600 Weak transcription Right Ventricle heart
9 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
10 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
11 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
12 chr1:179264800-179276200 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:179264800-179276400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:179264800-179277800 Weak transcription Brain Cingulate Gyrus brain
15 chr1:179264800-179278800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr1:179264800-179279400 Weak transcription HSMMtube muscle
17 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
18 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
19 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
20 chr1:179265000-179276200 Weak transcription Osteobl bone
21 chr1:179265400-179287600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:179266400-179276200 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr1:179266400-179286400 Weak transcription Fetal Kidney kidney
24 chr1:179266400-179322800 Weak transcription Small Intestine intestine
25 chr1:179267800-179287000 Weak transcription Spleen Spleen
26 chr1:179268400-179278200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:179268400-179280200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
29 chr1:179269600-179280000 Weak transcription Thymus Thymus
30 chr1:179270200-179283200 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:179270400-179277600 Strong transcription Monocytes-CD14+_RO01746 blood
32 chr1:179271000-179279000 Strong transcription Primary monocytes fromperipheralblood blood
33 chr1:179271200-179277600 Strong transcription Liver Liver
34 chr1:179271400-179276800 Strong transcription Fetal Intestine Large intestine
35 chr1:179271400-179277000 Strong transcription Primary T cells from cord blood blood
36 chr1:179271400-179277000 Strong transcription Dnd41 blood
37 chr1:179271400-179277200 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr1:179271400-179287600 Weak transcription HUES6 Cell Line embryonic stem cell
39 chr1:179271600-179277000 Strong transcription Primary B cells from cord blood blood
40 chr1:179271600-179278200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:179271600-179283800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
42 chr1:179271600-179286400 Strong transcription Primary T helper cells fromperipheralblood blood
43 chr1:179271800-179276800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
44 chr1:179271800-179277000 Strong transcription Primary B cells from peripheral blood blood
45 chr1:179271800-179277400 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:179271800-179280200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:179271800-179287600 Weak transcription HUES48 Cell Line embryonic stem cell
48 chr1:179272000-179276600 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr1:179272000-179277200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:179272000-179284400 Strong transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015