The 2.0 version of rSNPBase

Variant report

Variant rs6675772
Chromosome Location chr1:179289154-179289155
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179263800-179304600 Weak transcription Lung lung
2 chr1:179263800-179306400 Weak transcription Gastric stomach
3 chr1:179264200-179290200 Weak transcription Aorta Aorta
4 chr1:179264600-179292000 Weak transcription Rectal Smooth Muscle rectum
5 chr1:179264600-179304600 Weak transcription Right Ventricle heart
6 chr1:179264600-179310200 Weak transcription Brain Substantia Nigra brain
7 chr1:179264600-179314000 Weak transcription Brain Angular Gyrus brain
8 chr1:179264600-179314000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr1:179264800-179313800 Weak transcription Brain Hippocampus Middle brain
10 chr1:179264800-179313800 Weak transcription Fetal Brain Female brain
11 chr1:179264800-179334200 Weak transcription Colon Smooth Muscle Colon
12 chr1:179266400-179322800 Weak transcription Small Intestine intestine
13 chr1:179268400-179312000 Weak transcription Fetal Thymus thymus
14 chr1:179272600-179313800 Weak transcription Brain Anterior Caudate brain
15 chr1:179273000-179311600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr1:179273200-179290400 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr1:179273200-179294600 Weak transcription Placenta Placenta
18 chr1:179273800-179293400 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr1:179274400-179289400 Weak transcription Fetal Lung lung
20 chr1:179274600-179302400 Weak transcription Left Ventricle heart
21 chr1:179274600-179304400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:179274600-179306000 Weak transcription Stomach Smooth Muscle stomach
23 chr1:179275600-179311600 Weak transcription HUVEC blood vessel
24 chr1:179276400-179306200 Weak transcription Fetal Muscle Trunk muscle
25 chr1:179276600-179304800 Weak transcription Pancreas Pancrea
26 chr1:179276800-179290200 Weak transcription Fetal Intestine Large intestine
27 chr1:179276800-179295200 Weak transcription Primary T killer memory cells from peripheral blood blood
28 chr1:179277000-179290400 Weak transcription Dnd41 blood
29 chr1:179277000-179291600 Weak transcription Rectal Mucosa Donor 29 rectum
30 chr1:179277600-179296400 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr1:179280400-179292000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr1:179280400-179296200 Weak transcription NH-A brain
33 chr1:179280400-179314000 Weak transcription NHLF lung
34 chr1:179280600-179292400 Weak transcription HMEC breast
35 chr1:179280600-179292800 Weak transcription NHDF-Ad bronchial
36 chr1:179280600-179293400 Weak transcription Osteobl bone
37 chr1:179280600-179299000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:179281200-179300200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:179282000-179291400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:179282000-179313000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr1:179282200-179295200 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr1:179282400-179290000 Weak transcription Fetal Muscle Leg muscle
43 chr1:179282400-179290200 Weak transcription Primary hematopoietic stem cells blood
44 chr1:179282400-179290400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr1:179282400-179290600 Weak transcription A549 lung
46 chr1:179282400-179290800 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr1:179282400-179291600 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr1:179282400-179291800 Weak transcription Adipose Nuclei Adipose
49 chr1:179282400-179292000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr1:179282400-179292800 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015