Variant report

Variant	rs410589
Chromosome Location	chr1:179232077-179232078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1046385	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10798670	0.80[CHB][hapmap]
rs10913733	0.80[CHB][hapmap]
rs1173077	0.80[JPT][hapmap]
rs12022539	0.84[CEU][hapmap]
rs12026030	0.84[ASN][1000 genomes]
rs12031894	0.82[ASN][1000 genomes]
rs12049237	0.81[CEU][hapmap]
rs12073970	0.86[CHB][hapmap]
rs12097041	0.80[CHB][hapmap]
rs12120123	0.81[CHB][hapmap]
rs12130876	0.80[CHB][hapmap]
rs12138436	0.80[CHB][hapmap]
rs12402165	0.81[CEU][hapmap]
rs12404921	0.82[ASN][1000 genomes]
rs12405133	0.81[CHB][hapmap]
rs12405321	0.80[CHB][hapmap]
rs12408349	0.84[CEU][hapmap];0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs12725126	0.80[CHB][hapmap]
rs12740455	0.80[CHB][hapmap]
rs12745772	0.80[CHB][hapmap]
rs1325194	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13306731	0.80[CHB][hapmap]
rs13374852	0.81[CHB][hapmap]
rs16853917	0.81[CEU][hapmap]
rs16853936	0.84[CEU][hapmap]
rs17362081	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2152317	0.81[CEU][hapmap]
rs2636266	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2636278	0.93[CHB][hapmap]
rs2636287	0.84[JPT][hapmap]
rs2636289	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2636290	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2793799	0.80[JPT][hapmap]
rs2793804	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2793805	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2793807	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2793808	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2816179	0.81[EUR][1000 genomes]
rs2816180	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2816209	0.80[JPT][hapmap]
rs3122378	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3210839	0.80[JPT][hapmap]
rs3753524	0.81[CEU][hapmap]
rs380951	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818433	0.89[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs4077551	0.80[CHB][hapmap]
rs4077552	0.81[CHB][hapmap]
rs413881	0.84[ASN][1000 genomes]
rs425858	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4478776	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4651014	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs59777301	0.82[ASN][1000 genomes]
rs61821690	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6675772	0.81[ASN][1000 genomes]
rs931441	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179231400-179232200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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