Variant report

Variant	rs61821690
Chromosome Location	chr1:179188006-179188007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179176232..179178447-chr1:179186327..179188958,2	K562	blood:
2	chr1:179187242..179191261-chr1:179196503..179201085,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143322	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10913691	0.89[EUR][1000 genomes]
rs12022539	0.82[EUR][1000 genomes]
rs12026030	0.82[EUR][1000 genomes]
rs12028643	0.82[EUR][1000 genomes]
rs12031894	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12035050	0.83[EUR][1000 genomes]
rs12045521	0.83[EUR][1000 genomes]
rs12049122	0.81[EUR][1000 genomes]
rs12049237	0.82[EUR][1000 genomes]
rs12402165	0.82[EUR][1000 genomes]
rs12404921	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12408349	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12408668	0.82[EUR][1000 genomes]
rs1325194	0.89[EUR][1000 genomes]
rs1475798	0.82[EUR][1000 genomes]
rs16853917	0.80[EUR][1000 genomes]
rs16853936	0.83[EUR][1000 genomes]
rs17362081	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2050922	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2066162	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2068234	0.80[EUR][1000 genomes]
rs2152317	0.80[EUR][1000 genomes]
rs2636266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2636281	0.81[AMR][1000 genomes]
rs2636289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636290	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2793791	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2793804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2793805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2793807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2793808	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2816167	0.81[AMR][1000 genomes]
rs2816179	0.89[EUR][1000 genomes]
rs2816180	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2816206	0.81[AMR][1000 genomes]
rs2816209	0.81[AMR][1000 genomes]
rs3122378	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3753524	0.83[EUR][1000 genomes]
rs380951	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3818433	0.90[EUR][1000 genomes]
rs410589	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs413881	0.85[EUR][1000 genomes]
rs425858	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4478776	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4651014	0.89[EUR][1000 genomes]
rs58284152	0.82[EUR][1000 genomes]
rs58948941	0.86[AFR][1000 genomes]
rs59777301	1.00[AFR][1000 genomes]
rs60595009	0.82[EUR][1000 genomes]
rs61821735	0.84[EUR][1000 genomes]
rs61821737	0.81[EUR][1000 genomes]
rs61821738	0.81[EUR][1000 genomes]
rs61821739	0.82[EUR][1000 genomes]
rs61821740	0.82[EUR][1000 genomes]
rs61824363	0.82[EUR][1000 genomes]
rs61824364	0.82[EUR][1000 genomes]
rs61824365	0.80[EUR][1000 genomes]
rs61824368	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61824371	0.83[EUR][1000 genomes]
rs61824388	0.83[EUR][1000 genomes]
rs61824389	0.83[EUR][1000 genomes]
rs6675772	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7414502	0.82[EUR][1000 genomes]
rs931441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179122000-179189400	Weak transcription	Primary B cells from cord blood	blood
2	chr1:179139400-179196800	Weak transcription	Pancreas	Pancrea
3	chr1:179157400-179197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:179157400-179197600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:179169000-179197400	Weak transcription	NHEK	skin
6	chr1:179170200-179197200	Weak transcription	Fetal Intestine Large	intestine
7	chr1:179172800-179189800	Weak transcription	Primary T cells from cord blood	blood
8	chr1:179175200-179189200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:179176200-179195800	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:179176200-179195800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:179176200-179196600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:179176200-179197600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:179176400-179196200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:179176400-179197000	Weak transcription	Fetal Brain Male	brain
15	chr1:179176400-179197400	Weak transcription	Fetal Lung	lung
16	chr1:179176400-179197600	Weak transcription	Left Ventricle	heart
17	chr1:179176600-179196200	Weak transcription	Brain Hippocampus Middle	brain
18	chr1:179176800-179189400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr1:179177000-179196000	Weak transcription	Fetal Brain Female	brain
20	chr1:179177000-179197600	Weak transcription	HSMMtube	muscle
21	chr1:179177400-179197200	Weak transcription	Brain Germinal Matrix	brain
22	chr1:179177800-179196600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:179178000-179196000	Weak transcription	Aorta	Aorta
24	chr1:179178000-179197600	Weak transcription	Gastric	stomach
25	chr1:179178400-179189400	Weak transcription	HepG2	liver
26	chr1:179178400-179189600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr1:179178400-179197600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:179178600-179189000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:179178600-179197600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:179178600-179197600	Weak transcription	NH-A	brain
31	chr1:179178800-179197400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:179179200-179189800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr1:179179200-179196000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:179179200-179197400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:179179800-179197200	Weak transcription	Thymus	Thymus
36	chr1:179180200-179197600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr1:179180800-179197200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr1:179181600-179197600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr1:179182600-179189800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr1:179183200-179196000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:179183400-179193000	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:179184000-179188600	Strong transcription	Fetal Intestine Small	intestine
43	chr1:179184200-179196800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:179184400-179193400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr1:179184400-179197600	Weak transcription	Fetal Thymus	thymus
46	chr1:179184600-179189600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr1:179184600-179196200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr1:179184600-179196600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr1:179184800-179189000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr1:179184800-179197600	Weak transcription	HMEC	breast

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