Variant report

Variant	rs10913690
Chromosome Location	chr1:179067071-179067072
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179051978..179053865-chr1:179066668..179068883,2	K562	blood:
2	chr1:179065559..179067904-chr1:179068999..179071030,2	K562	blood:
3	chr1:179062328..179064018-chr1:179065125..179067729,2	K562	blood:
4	chr1:179066044..179068422-chr1:179070737..179074514,3	MCF-7	breast:
5	chr1:179066049..179068394-chr1:179068475..179071418,2	MCF-7	breast:
6	chr1:179063474..179066800-chr1:179066947..179069358,3	K562	blood:
7	chr1:179056279..179060316-chr1:179064891..179068756,4	K562	blood:

Extended variants
information (count: 109 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1078872	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs10913692	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs10913695	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10913696	0.80[AMR][1000 genomes]
rs10913697	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1173077	0.96[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs12130276	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1325194	0.93[GIH][hapmap]
rs1325195	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856967	0.95[EUR][1000 genomes]
rs1856968	0.82[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1858551	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2066279	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2087559	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2130576	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs2171958	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs2171959	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2258217	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2258221	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2486995	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2486997	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2486998	0.86[ASN][1000 genomes]
rs2493123	0.81[ASN][1000 genomes]
rs2493124	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636265	0.86[EUR][1000 genomes]
rs2636266	0.83[GIH][hapmap]
rs2636274	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636276	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636277	0.95[CHB][hapmap];1.00[CHD][hapmap]
rs2636280	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.92[EUR][1000 genomes]
rs2636281	0.86[EUR][1000 genomes]
rs2636282	0.87[EUR][1000 genomes]
rs2636287	0.92[CEU][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs2636290	0.88[GIH][hapmap]
rs2636291	0.85[ASN][1000 genomes]
rs2636293	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs2791936	0.84[ASN][1000 genomes]
rs2791940	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2791941	0.83[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2791942	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2791943	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2791944	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.82[ASN][1000 genomes]
rs2791945	0.81[ASN][1000 genomes]
rs2793790	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2793793	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2793794	0.86[ASN][1000 genomes]
rs2793795	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2793796	0.83[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2793797	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2793798	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2793799	0.96[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs2793803	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes]
rs2793805	0.83[GIH][hapmap]
rs2793806	0.85[EUR][1000 genomes]
rs2793810	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2793812	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs2793813	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs2793816	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap]
rs2816166	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2816167	0.86[EUR][1000 genomes]
rs2816168	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap]
rs2816183	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2816184	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2816185	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2816186	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2816187	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2816189	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2816190	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs2816191	0.82[ASN][1000 genomes]
rs2816193	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap]
rs2816196	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2816197	0.90[EUR][1000 genomes]
rs2816198	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs2816199	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[EUR][1000 genomes]
rs2816201	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2816202	0.92[EUR][1000 genomes]
rs2816203	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs2816204	0.92[EUR][1000 genomes]
rs2816206	0.87[EUR][1000 genomes]
rs2816208	0.88[EUR][1000 genomes]
rs2816209	0.96[CEU][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs2816210	0.84[EUR][1000 genomes]
rs2816211	0.87[EUR][1000 genomes]
rs2816213	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs2816214	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes]
rs2816218	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs3210839	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.99[EUR][1000 genomes]
rs36122838	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs377785	0.86[EUR][1000 genomes]
rs3813642	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3813643	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3818433	0.88[GIH][hapmap]
rs3829794	0.95[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs411266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs434283	0.86[EUR][1000 genomes]
rs451088	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4651012	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4651013	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6668200	0.89[YRI][hapmap]
rs7556011	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs915337	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9286921	0.86[ASN][1000 genomes]
rs965401	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9662858	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs9726961	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9727252	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9728480	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9729129	0.86[ASN][1000 genomes]
rs9729199	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10913690	TOR3A	cis	Artery Tibial	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179053000-179072200	Strong transcription	Primary T cells from cord blood	blood
2	chr1:179053200-179067600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:179053200-179071000	Strong transcription	NHEK	skin
4	chr1:179053200-179096000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:179053400-179067400	Strong transcription	Fetal Intestine Small	intestine
6	chr1:179053800-179067200	Strong transcription	Thymus	Thymus
7	chr1:179053800-179069000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:179053800-179074600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:179054000-179067600	Strong transcription	Fetal Intestine Large	intestine
10	chr1:179054000-179071000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:179054000-179074800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:179054000-179077200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:179054000-179079400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:179054400-179067200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:179054400-179067800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:179054600-179067200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr1:179054800-179067200	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr1:179054800-179067600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:179054800-179067800	Strong transcription	Brain Germinal Matrix	brain
20	chr1:179054800-179072200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:179056400-179067400	Strong transcription	Fetal Thymus	thymus
22	chr1:179056600-179067800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr1:179056600-179068000	Strong transcription	Dnd41	blood
24	chr1:179057000-179067800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:179057200-179076800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:179057400-179068800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:179057600-179067200	Strong transcription	HMEC	breast
28	chr1:179058000-179067400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:179059200-179096400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:179059400-179067800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr1:179059400-179090400	Strong transcription	HUVEC	blood vessel
32	chr1:179059600-179067400	Strong transcription	K562	blood
33	chr1:179059600-179067800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:179059600-179067800	Strong transcription	Brain Hippocampus Middle	brain
35	chr1:179059800-179068000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:179060000-179068000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr1:179061000-179067200	Strong transcription	Brain Anterior Caudate	brain
38	chr1:179061200-179068800	Strong transcription	Hela-S3	cervix
39	chr1:179061400-179067800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:179061400-179068000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr1:179061400-179071000	Strong transcription	Fetal Muscle Leg	muscle
42	chr1:179061400-179071600	Weak transcription	Fetal Heart	heart
43	chr1:179061400-179090400	Strong transcription	HSMM	muscle
44	chr1:179061600-179067400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr1:179061600-179067400	Strong transcription	Fetal Stomach	stomach
46	chr1:179061600-179068000	Strong transcription	Adipose Nuclei	Adipose
47	chr1:179061600-179068000	Strong transcription	A549	lung
48	chr1:179061600-179070800	Strong transcription	Osteobl	bone
49	chr1:179061600-179071000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:179061600-179072400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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